HsaINT0073791 @ hg19
Intron Retention
Gene
ENSG00000169919 | GUSB
Description
glucuronidase, beta [Source:HGNC Symbol;Acc:4696]
Coordinates
chr7:65439906-65441189:-
Coord C1 exon
chr7:65441002-65441189
Coord A exon
chr7:65440059-65441001
Coord C2 exon
chr7:65439906-65440058
Length
943 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
TGGTGCTTTGGCTGTCATAGGTG
3' ss Score
6.97
Exon sequences
Seq C1 exon
GGCTGGTGAATTACCAGATCTCTGTCAAGGGCAGTAACCTGTTCAAGTTGGAAGTGCGTCTTTTGGATGCAGAAAACAAAGTCGTGGCGAATGGGACTGGGACCCAGGGCCAACTTAAGGTGCCAGGTGTCAGCCTCTGGTGGCCGTACCTGATGCACGAACGCCCTGCCTATCTGTATTCATTGGAG
Seq A exon
GTAATGGTGGTTTGGGACATGCCTAAGGGAGGTCTTTTGCCCCCATGTGGTGACCCTGGCTTCAGCAGGAGCCCAAGACAGGTGGATGGGCAGGCATGGTCCTCTGAGCTTTCTGATGTTTCTCACCCTTGGTGGGAGGCCCATTTTCTTTTTTTTTTTTTTTTTTGAGATGGTCTCACTCTGTCACCCAGGCTGGAGTGCAATGGCCTGATCACAGCTCACTGCAGCCTTGAACTCTCAGCCTGCAGCAGTCCTCCTGCCTTGGCCTCCTGAGTAGCTGGGACTACAGGCACATGCCACCATGTCTGGCTAAATAAAAAAAATTTTGTAGCCTGGGCAGAGTGACTCATGCCTGTAATCTCAGCATTTTGGGAGGCTGAGGTGGGTGGATCACTTGAGGCCAAGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATATGAAAATTTGCTGGGCATGGTGGCGAACACCTGTAATTCCAGCCACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACTCAGGAGGCAGAGGCTGCAGTGAGCTGAGATCACACCACTGCACTCCAGCCTGGGGGACAGACTGAGACTGTCTCAGAAGAAAAACATTTTTTTTTTATAGAGATGGGGTCTCAGTCTGTCAGCAGGCTGGTCTTCAACTCCTGGACTCAAGTGATCCTCCTGCCTTAGCCTCCCAAAGTGTGGGAACTCCAGGCATGAGCCACCTTGTCTTGTCAAAGGGAAGGCCATGTTTTGAAGGGCAGGTTCCCAGGGTCAGCCAGGGTAGGGCAGAACCTCTGATTGCTGCATCTCTGCTTACAGGCCCAGAGGCAGCTGCTGGGGTGCACGAGGGGCCTTCCTGCTGGAGGGCAGGCCGGATGGGGCTCAGGCTGTCGGGGTGCTCACACCTGGTGCTTTGGCTGTCATAG
Seq C2 exon
GTGCAGCTGACTGCACAGACGTCACTGGGGCCTGTGTCTGACTTCTACACACTCCCTGTGGGGATCCGCACTGTGGCTGTCACCAAGAGCCAGTTCCTCATCAATGGGAAACCTTTCTATTTCCACGGTGTCAACAAGCATGAGGATGCGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169919-GUSB:NM_000181:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0070316=Glyco_hydro_2=FE(73.8=100),PF0283612=Glyco_hydro_2_C=PU(0.7=3.2)
A:
NA
C2:
PF0070316=Glyco_hydro_2=PD(21.6=43.1),PF0283612=Glyco_hydro_2_C=PU(8.6=51.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTACCAGATCTCTGTCAAGGGC
R:
TCCTCATGCTTGTTGACACCG
Band lengths:
326-1269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)