BtaINT0071393 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004746 | HELZ
Description
helicase with zinc finger [Source:HGNC Symbol;Acc:HGNC:16878]
Coordinates
chr19:63859121-63860612:-
Coord C1 exon
chr19:63860561-63860612
Coord A exon
chr19:63859197-63860560
Coord C2 exon
chr19:63859121-63859196
Length
1364 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
ATATCCTGATTACTCTCTAGGAT
3' ss Score
7.76
Exon sequences
Seq C1 exon
ACAGCAACTAGTAACGTCCTCTCTGGATATCATGTGGAAGACTTAGAGGAGG
Seq A exon
GTAAGTACTAAACTGTGCAACCTCTGTAGCTATAATTACATTGGGCGTTGCTTCTTGTTGATTAATGGGAGGGCATTTCTGAGTTATAGTACAGGTTAGTGGAAGCATAGAAGAGAATATAAAAGTTTCATTTAAGAAATGTGGATGAAAGCAATTTTTTCCCTAACCCCTATTCATAGAATAATAGAGGAATGGAGGCGGGAGGTAATTGCGGAAGTCATCTGTTCATCTCTTTTCCACCGTATATGTAGTTCTAAATTAAAACCTCATTCTTAGCAATCTGTGGAGGGAGATCTTTTCTCCTTTCTCATGCTCTGTCACATGCTGGTGCAGTTACTACTTTCTGGAAATGGTCCTGCCAGTAGTAAGGTCCGTGGGCTCCTCTTCTCTTCCCAGAGGAAGGTGGAGAGAGGCCAGCACTCACTGAGTGTTTGCTCAGTGACGTCTGCTGTTCAGTGGCTTTCACAAAACAAGTACTGAGTTATTAGAGCCCTTCTCCATCTTTTTGATAGGTGATGAAACTGATGTTTGTTAAGGTTCAGTAATTTCCCAGTCACGCATACAGTAAAGGGATGACTCATAGCTTTAAGCTCAGTCTGGCTCAGTGGATTTTGTCCGGCGGTGTGGGCTGGGCACAGTGACTTGTGAGGAGGCAGGAAATGGCCTCAAGGTCCTGGAGGCTTGCTGCTGTTGAGCCTTGATGGCTCCAGCCTTTTTTCTTGGACGCTTTGTTTCCATTGGATTATTTGGAACCTTTTATCTGAATGCATCAAAATTCACTGTATTCAGAAGTAAACACGTGTTATTTTTAGCTCCTATCTCAGAATTCACCTTTATGAACTTTAATTGTTAAAAAAGGATTACTTTATGCAGCGACACGTGTCAGACACCCCCTAAGGAACATGGATGGCAATGTGGAACGTATTCCATATACAGGACTGGAATTTGTTTTACAAAATTTCCTCTTCCCAGGAGACCATAATTTTCTGATTCTGGAAGTAGTTCCTAATAGAGATGTAACTCATACCTAAGACGTGACAAGCATGCCAACACATCCCCCTTTAGGTGCCGGGGAGAGACTGCACTTGGAGTATGTCCACCGGTTGCTGGGATAGAGTAAGGGCCACTGACTTGTTTTAGTGGTTGTGTAACTGCTCCTTCAGTGGTTTCTAAGTTTCATGTGGCTAACTGATTTAATCCATTTGATTGGTGAAGTACTCTTCTTGGTAGAGACAAGCATGTCATGTTCATTTTACATCATCTGAGATGATGTGTATGGAGGGTTAATAGTATTTCTTACACATTAAATATCAGAATTATCAGCAAGCCTCAAATGATAAGACTATATCCTGATTACTCTCTAG
Seq C2 exon
GATCTTGTAATGGTTGGCATTTCCGCCCACCACCTAGGGGAATCACAAGCAGCGAGGAATATACTTTGTGTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004746:ENSBTAT00000006233:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0064219=zf-CCCH=PU(25.9=26.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]