MmuINT0077096 @ mm10
Intron Retention
Gene
ENSMUSG00000020721 | Helz
Description
helicase with zinc finger domain [Source:MGI Symbol;Acc:MGI:1925705]
Coordinates
chr11:107599150-107600351:+
Coord C1 exon
chr11:107599150-107599201
Coord A exon
chr11:107599202-107600275
Coord C2 exon
chr11:107600276-107600351
Length
1074 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TCCACATTCCTCCTCCGTAGGGT
3' ss Score
10.59
Exon sequences
Seq C1 exon
ACAGCAACGAGTAATGTCCTGTCTGGATGTCACGTAGAAGACTTAGATGAAG
Seq A exon
GTAAGCACTAAATATTGTCATAACTTCAGGCAGTTCTTAGTCCCGCCCTTGCTGCTTTTTTGAAGAATTGCTGGGAAATACAGTCCCTCTAATTGGAAATGTGGAGAAGGCTATAAGCATTTACAAGTAGGTGTGAGGAAGCAGATCTTTCTCTGGGACCTTTTCCTAAGATAGCTGAGGAATGACAACTGCCCGGTAACTCCCCCTCCTCTGCCTCTGTTTCTGAGTGTTTAGATCACAGGTGTGTACAGTGAGCCTGCTCCCCCGTGCCCATTCCATGGGTAGTGACTCTCATAGAACACACACACTGGCTTCTCAGGCTTCGCCTTCATCCTTATAGTCGGGGTTAGAGGGAATATTTATTAAAGCTCAGTAGTTCTCCTGTAGTGGCTGAAGCACAACTTTTAAGCTTATCCTGGCAGAATCTTTTCTGTCCCCTGAGGAGAGGTTGTAAGAATAGAAAATGGCTGCTTACCCTTTCTCCTCTAGGCCTTATTTTCCTGGGCTTATTTGGAACATCATCTAAATCATTCAGGTCATTTGTACTCAGAAATATACGCACTTAGCTCCTATATATGCATAATACAATAAACATAATATACGCACTTAGCTCCTATATATGCATAACTGCTTGCACTTCATTTCTCTTATGAAGTGTTCAGAGGTGATGTGCCCCAAACAGATCATAAGAGCTTCTCAGTGTCGTGGGTAGAGTTTGTACACAAGACCTCCTGCCTGGAAGGTCAGTTTTCATGTGGGAAGGAGTTCTTCATAGATGTGCATCCGTGCTTGAGAACGACACGTGCCAGCTTCCCTCCTGAGTTCTCAGAGAAGAGACTGCCCTGGGAGGAAGCCCACCCCCTGCCAGATGAGATCAGGCCAGCAGCCTGACTTAGCTGCTGGCTAATGGCCTCTGTCAACAGAGAATTTAGCTGCTGGGTAGAGGCACCTTTGCCGTGCCTTTCTCATACCATCTGGGATGATGCATGTAGAGATGTGATTCTTAGACAGAAGATGTTGGAATGACGTGGTAGCCTCACGTGATGTGATTATGTCCACATTCCTCCTCCGTAG
Seq C2 exon
GGTCCTGTAATGGTTGGCATTTCCGCCCACCGCCCAGGGGCATCACCAGCAGTGAGGAGTACACCTTGTGTAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020721:ENSMUST00000100305:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0064219=zf-CCCH=PU(25.9=26.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types