HsaINT0075335 @ hg38
Intron Retention
Gene
ENSG00000198265 | HELZ
Description
helicase with zinc finger [Source:HGNC Symbol;Acc:HGNC:16878]
Coordinates
chr17:67193967-67195470:-
Coord C1 exon
chr17:67195419-67195470
Coord A exon
chr17:67194043-67195418
Coord C2 exon
chr17:67193967-67194042
Length
1376 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
ATATCCTAATTACTCCCTAGGGT
3' ss Score
7.84
Exon sequences
Seq C1 exon
ACAGCAACTAGTAACGCCCTCTCTGGATATCACGTGGAAGACTTAGATGAGG
Seq A exon
GTAAGTGCCAAATGCTGTGTAACTTCTGGTAGCTGTGAATAAGGGCTTTGCTTTTATTAATTATTGGGAGAAAATTTACTGAGTTACAGTACATATAAGTGGAGATGTAGGAGAGAATATAAGATTTTAATTTTAAGAAGTAGGTGTAGTTGAAAGCAATTTTCTCCCTGGCACCTTTTCATAGAATAATGGAGTAATGGAGGTAGGAGGTAACTTCAGAGGTCATTTAGTTTATTTTCTTGCCTCCGTGTAGGACTAAATTTAAACATCATTCTTAACAATCTATAGAGGGAAGACTTTTCTTCTCTCTCTGTCCTAAGCTAGTACAGTTATTACTTTTTGGAAGTTTTGATCTGTGAGCTGAGTTGTTCCTGCCCTAATGAAACTCTGTGATCTCCTCTCCTCTCACCAGAGGAAAGGGAAAAGAAGAACATTCATTGAGTGCCTGCTGAATGCTGTGTACTATGGGCATTGGCTTTCACAAAACATGTACTGACTTAGAGTCCTTCTGCATCTTTTTGACAGGTGATGAAACTGACATTAAGGTTTATGAGTTGCCCTAAAGTCACACAGCTAGTATAGAGATGAAGCACAGCTTTAAACTCAACCTGGCTGAATATCTTTCTTTTCCTTTTCTGGGGGGCATAGTGACTTGTGAGGGAGTAGAAAATGGCTATAAGTTCCTTGAAACTTGTTGCTGCTCAACCTCTATAAAGTTCTAGCCTTTTTTTCTCATTATCCTTATTTTCCCTGGTTTATTTGGAAACTCCTATCCAAACAAATCAAAGCTCATTGTATTCACAAGTAAGTAAATACTGTGTTTTTAGCTCCTATCTCAGAATTAAACTTTTTGAACTTTATTTCAATTTTAAAAAAGGATTATATTCTACAGTGACGTGTCAGACAAATCTTAAGGAACATGGGTGATAATGTGATAACATGGAACTTCTTCTCACTGTGCAGTAGTGGAATTTGTTATGTAAGCTTTCCTTCCAGGATACAATGATTTTTTTCATCCCTGAAGGAATTCCTGATAGACAAACATCCCATGCCTAAGAAATGACAAGTATGCCAGCCACCCGCCTTGTGTTGTTAGGGAAGAGATTGCACTGGAAACCTGTCCACCAGTTGCTAGGACAGAGTCAGAGTCACCAGCTTGATTTTAACTAACTGCTGGGAAACTGCCTCTTCAGTGATTCCTATGTTTTATGTAGTTGATTGGTAGATTACTTTTTGGTAGAGGCAAGTATGTCATGTTCTTTTTTACATCATATGGGATGATGTATGTGGAGGGATTGTAGTATCTCTTACACATTAAAATATCAGAATTACTGGCTAGCCTCAAATGATAAGACTATATCCTAATTACTCCCTAG
Seq C2 exon
GGTCTTGTAATGGTTGGCATTTCCGCCCACCACCTAGGGGAATCACAAGCAGCGAGGAATATACTTTGTGTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198265:ENST00000358691:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0064219=zf-CCCH=PU(25.9=26.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development