GgaINT0127303 @ galGal3
Intron Retention
Gene
ENSGALG00000021439 | HELZ
Description
NA
Coordinates
chr18:7182462-7183012:+
Coord C1 exon
chr18:7182462-7182510
Coord A exon
chr18:7182511-7182936
Coord C2 exon
chr18:7182937-7183012
Length
426 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
GTTACTTTCCTACCCTGCAGGGT
3' ss Score
9.64
Exon sequences
Seq C1 exon
GCAGCTGATAAAGTTCCATCAGGATATCATGTAGAAGATTTAGAAGAAG
Seq A exon
GTATGTAGTTAATTTATAAAGCTACTTAATTTTGTAGTGAGAAGTCCTTGAAGATTCTGATGAATGTTCAACACTGGATAGCAGTCACCAGAAACCAGTCTTGGCTGTTTATTTTGATGATCCCTTGGGGTTTAGGTTGAATTATCTTGTTGGTTGAATTTGTTGACAGAATTTTCCACTTATTTGTCAAAGTGTTGTAGCAGAGCTTGCTTACTTCTGCAAATTATTGAAATTTGCCTTCATACCCTTTAAACCTTTGTTCTAAATAAATTAGTTAGGAATTGAAGATTATTTTTGAGGTGGATGACTTTGCGTGTGTACAAATATCATTTGGGTTGATGTTTAAAGGCATGGTTCTCTGGGTACTATCAGACTTAAAAGTAATTGGCAATTAGTCAGAACTTGGGTTACTTTCCTACCCTGCAG
Seq C2 exon
GGTCCCGGGATGGCTGGCAGTTCCGTCCTCCACCCAGGGGAGTCACAAGCAGTGAAGAATATACACTATGTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021439:ENSGALT00000005876:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.294 A=NA C2=0.346
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0064219=zf-CCCH=PU(25.9=26.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]