RnoINT0070088 @ rn6
Intron Retention
Gene
ENSRNOG00000003213 | Helz
Description
helicase with zinc finger [Source:RGD Symbol;Acc:1307049]
Coordinates
chr10:95818998-95820572:+
Coord C1 exon
chr10:95818998-95819049
Coord A exon
chr10:95819050-95820496
Coord C2 exon
chr10:95820497-95820572
Length
1447 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
ATGTCTGCATTCCTCCCTAGGGT
3' ss Score
10.48
Exon sequences
Seq C1 exon
ACAGCAACAAGTAATGCCCCCTCTGGCTGTCATGTGGAAGACTTAGATGAAG
Seq A exon
GTAAGCACTAAATATTGTTATAACTTCAGGCAACTCTTCTTTTTTACTTGCATTTTTAATTTATATTTTAAATGTTATCCCATTTCCCTGTTTCTCCTCCAAATACCTGCTATATATCGCCTCCCCTCACCCCCCAGCTTCTGTGAGGGTACTCACATCTCTCATCCACCCACCCACTCCCACCTCCCTGCCCTGGCATTCCCCTACACTGGGGGAGCCTTCACAGGACCAAGGGTCCCTTCTCCCGTTGATGCCCAACAAGGCCATCCTCTGCTGCATATGCAGCTGGAGCCATGGGTCCCTCCATGTGTACTCTTGTGATTGTGGTTTAGTCCCTGGGAGCTCTGGGAGGTCTGGTTGGTTGATATTGTTGTTCTTCCTATGGGGTTGCAAACCCCTTCAGCTGCTACAGTCCTTTCTCTAACACCTCCATTGGGGACCCTGTTTTCAGTGGTTAGCTGCGAGTATCCGTTCAGGCAACTCTTATTCCAGCCTTTGCTTCTTTTTTGAAGAATTGCTGGGAAGTGCATTCCCTCTAATTGGAAATGTAGGAAAGAATATAAATGTTTAGAAGTAGGTGTGAGAAAGCAGCTCTCTCTCTGGGACCTGTTCCTAAGATAACTGTAGCTGAGGCTGGCCTTGAGCCCGAGGTGCTTGGATCGCAGGTGTGTACAGTGAGCCTGCTCCCCCAGCTGGCCCTGCCGTGCTCATTCCATGGTAGTGACTGGCATAGAGCACACACTGGCTTCTCAGCTGCTTCATCTTTGTAGTCGGGGTTAGAAGGAGTATTTATTAAGGCTTAGTAATTTCCCTGTCGTGGCTGAAGCACAACTTTTAAGCTTAGCCTGGCAGAATATCTTTTTTTGTCTCCTGAGGAGAGGTGGGGGACATACTTGTGAAAATAGAAAATGGCTGCCTGCCCTTTCTCTCCTAGGCCTTATTTTGCTAAGCTTATTTGGACTTAATCTAAATGCATCAAGTCATTTGAATTGAGAAATATACACACTTAGCTCCTATGTATGTGTAAGAGTTTGAGCTTCATTTCTCTGAGAAAGTGTTTAAGGGACGTGCCCCACACAGATCTTCAGGAGCTTCTCAGTCAGCGTCAGTGGTGGAGTCTGTGCACAAGACCTCCTTCCCGGACGGTCAGTTTTCAGTCCGGAAGGAGTTCCTCATAGACACGCATCCATGCTTGAGAATGACACATACCAGCCTCTCTCCTGAGTTCTCCGAGCAGAGAGAAGCCCACCTCCTGCCAGATCAGATTCAGGCCACCAACCTGCTTTAGCTGTTGGGTGATGGCCTTTGCCAGCAGGGGCCCGGCCCCTTTGCTGGGTCTTTTTCATATCGTCTGGATGATACGTGTGGAGCGGTGTGTCTTAGACATAAGGTATTGGAATGGTGTGGTAGCCTCATGTGATGTGATTATGTCTGCATTCCTCCCTAG
Seq C2 exon
GGTCTTGTAATGGTTGGCATTTCCGCCCACCGCCCAGGGGGATCACCAGCAGTGAGGAGTACACCTTGTGTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003213:ENSRNOT00000030300:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0064219=zf-CCCH=PU(25.9=26.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]