BtaINT0076513 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001354 | INPP5E
Description
inositol polyphosphate-5-phosphatase, 72 kDa [Source:HGNC Symbol;Acc:HGNC:21474]
Coordinates
chr11:103928312-103929051:-
Coord C1 exon
chr11:103928915-103929051
Coord A exon
chr11:103928445-103928914
Coord C2 exon
chr11:103928312-103928444
Length
470 bp
Sequences
Splice sites
5' ss Seq
CAAGTCAGT
5' ss Score
2.74
3' ss Seq
TGACGGCCCTTCCTCCCCAGCAT
3' ss Score
7.9
Exon sequences
Seq C1 exon
GACCGCATCCTATACAGGAGCCGCCACCAGGGTGACATCTGCCCCGTCAAGTACTCCTCCTGCCCCGGCGTCAGGACGTCCGACCACCGCCCCGTGTACGGCCTGTTCCGGGTCAAAGTGAGGCCAGGGAGAGACAA
Seq A exon
GTCAGTACCCTTGGATGCTCTCGCTCCTGGGTCCCGGGCGGGGGCGGCCTGAGAGCACAGCCTGGTCTCTGCGTGTCCCGGTGCCCCGAGGGGAGCGGGGTTCTGGGTGCCCCGAGGGAAGGTGGCTGTGCCGTGGGTCAGAAGCCAGCGTCAGGCGAGCGACGCACCAGAGGGTGCGGGCCTTGCCCGCACCCCGAGCCAGCCAGGCCTCCCAGGCACATGCCCCCTAAAACAGCCAGTGGGTGGCAGGGGCCACCTACCAAGGGGTCAGCCTGGCACAGGCGGGAGGCAGCGTCCGCTGGCTGTCGGCACACAGCTGCAGGTGGGCGCGTGGATGGTGGGCCCGGGCGCAGCCCCGGGGACCCAGGCCTCAGCTGTGCCCAGCTCTTCCACATGCCGCCTACCCGTGGCCGACACTCAGGTGCGGGGGCCAGGAGCACAGTGCCCTCCTGACGGCCCTTCCTCCCCAG
Seq C2 exon
CATCCCACTTGCCGCTGGCAAGTTTGACCGGGACCTGTACCTGCTGGGAATCAAGAGACGCATCTCCAGAGAGATCCAGAGGCAGCAGGCACTCAAGAGCCAGCACGCCAGCGCCATCTGCACCGTCTCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001354:ENSBTAT00000001784:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.045
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=PD(10.0=60.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTATACAGGAGCCGCCAC
R:
TCAGGAGACGGTGCAGATGG
Band lengths:
263-733
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development