HsaINT0081002 @ hg19
Intron Retention
Gene
ENSG00000148384 | INPP5E
Description
inositol polyphosphate-5-phosphatase, 72 kDa [Source:HGNC Symbol;Acc:21474]
Coordinates
chr9:139323073-139324865:-
Coord C1 exon
chr9:139324729-139324865
Coord A exon
chr9:139324260-139324728
Coord C2 exon
chr9:139323073-139324259
Length
469 bp
Sequences
Splice sites
5' ss Seq
CAAGTCAGT
5' ss Score
2.74
3' ss Seq
CGCCCCCTCCTCCTCCACAGCAT
3' ss Score
9.84
Exon sequences
Seq C1 exon
GACCGCGTCTTGTACAGAAGCCGCCACAAGGGTGACATCTGTCCTGTGAGCTACTCTTCCTGCCCCGGGATCAAGACGTCCGACCACCGCCCTGTGTATGGCCTCTTCCGGGTGAAAGTGAGGCCGGGGCGAGACAA
Seq A exon
GTCAGTGTTCTCCCGCTCACCTTCCCCCTTGGGCCTGGGGGTCGTGCCGTCGTCCCATGAGCTAAGAGGGTCCCTGTCATCGTGGGGTTCCACTTGGGGCTTTGTTCTGGGACCTTCAGGGCTGTGTTCCCCGGGATCGGTTGGACTCATCCTGGAGCAGGAGAAGGCAGGAAGGGGAGAGGCTCTGGAAAGTGAAGAGAGGCCCAGCTGGGGGGCTGGGTGTGGCCAGCTGGAGGGACGAAGGCCTTAAGCACTCAGGCATCCGCCCTGTCCTTCCTGCGGCTCTGTCCCAGGAACAGGCCTCCGTGTGCTTAGAGGCAGGGCCAATCTGGGCCAGTGCCCACCTAACAGCCCCTCATCCTGGCCCTGGGTGTCCTCTTAAATGCCCCCTCCTCCGGGGCCGGCCCCCTCCTAACGCCCCCTCCTCCTGGCCCTGGGTGCCCTCCTAACGCCCCCTCCTCCTCCACAG
Seq C2 exon
CATTCCGTTGGCAGCTGGCAAATTTGATAGAGAACTGTACTTACTAGGAATTAAAAGACGGATTTCGAAGGAGATTCAGAGGCAGCAAGCACTACAGAGTCAGAACTCCAGCACCATCTGCTCCGTTTCTTGAAGTTTGCTGAACGAGGACTCACAGCTGCAACGTGGGGTGATTGTATTGATCAAAACCCACTGGGAAGGACAAAGAGTTTGCCGCCTTTCGGGGATCCGAGGGACTGTGGCGACCGTGCCTCTGTGCCAGCGTCCCAGGAAGGAAGCCAACCCTGAGCGAGCCTGTCCTCTGTGGCAGGTCCACACGGTGTGGGTGGGCAGGGCTTGGACCCCCGTCTCCATGGCAGGTCCATACAGCATGGGTGGCAGGGTTTGGACCCGCCCAGCAGCACCACGGACCCCAGCCACTCTCGGGGGCAGACGTCAGAATCCGTTCCTGAGCAGCTCCTGTGCCCTGGGGGCAGTCACAGAGCCCCCCAACACCCCCGTGCTCTGCACCAGCCTCTCCCTCCACACCCGAAGCAGGCGTCCATCTGTGTCCTCCTGGCAGCCCCTCAAACACACACCACCCCATGTCACACGGGTATCCAGAGCAAGGCTGGATCTGGGCTAGGTGACCCCTGGGGCCTCAGACCTCTGAGTGGGCCCCAGAGCCCAGCTGAGGAAGCCACACAGCCTCCAGGACGTGGCACGGTTCCCCTCCACTTGGCTGCAAGTCGCCTGCCATGGGGCGAGGAGGCCTGCACCCCAGTATAAGGGCCTCCCCAGCTGAGTAAGAAGCTGCTTCCCCTCCTCTCATAGGCCAAGCCTATTGTGTGAAACCATCTCATGGTCTTGGTGACGTAGACCATTTTTGAAACCGTCTCATGGTCTTGGTGACGTAGACCGTTTGCTTCTTTAACTCCAGCCGCGGAATGACATTAGTGGAACCGGGCTAGGGAACTGCTGGAAGTTCAGGATGCCACCACCTTGAACACCTAGGCCAGGGATCCCCACCATGTCCCGGGTTTCTTTCTTCGAGAGTATAGAACCGTTCATTCTTGCTTTGTGTCCCATTCCATCTCTTGAAAAAATGTAGTCTTTGAATGTGTGAAAATCTAGGGACATTCAATCTAGTCTTTTAAATTATTTTTCCATATTTATATTTTTAAATAAATGCATATATTGAGTCTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148384-INPP5E:NM_019892:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=PD(10.0=60.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTACAGAAGCCGCCACAAG
R:
CGAAAGGCGGCAAACTCTTTG
Band lengths:
351-820
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)