RnoINT0074715 @ rn6
Intron Retention
Gene
ENSRNOG00000019039 | Inpp5e
Description
inositol polyphosphate-5-phosphatase E [Source:RGD Symbol;Acc:620478]
Coordinates
chr3:3844115-3844848:-
Coord C1 exon
chr3:3844712-3844848
Coord A exon
chr3:3844245-3844711
Coord C2 exon
chr3:3844115-3844244
Length
467 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
3' ss Seq
TAAAGGTCTTTCCTCCACAGCAT
3' ss Score
7.5
Exon sequences
Seq C1 exon
GACCGAGTCCTATACAAAAGCCGTCACAAGGGTGACATCTGTCCCATGAAGTATTCCTCTTGTCCTGGGATCAAGACTTCAGACCACCGTCCTGTGTATGGCTTGTTCCGGGTGAAAGTGAGGCCAGGACGAGACAA
Seq A exon
GTAAGCCCCTGCTTGCCCCTCAGAGCTGGCTGAAGCTTTGGGGGGTCCCCGCCAGTTCTCAGATGGGGTGTTTTGGGATGGATGACAGGCTTAGGTAAGGAGCGTGCCCATGCTTCATGCAGCCCTAGGCCATTATGGATTTGCTTTCCTCAGAGCTGAGGTCCTAGCAGTTCTCAGGGTATCCATCCCTACAGCCCCCAGGCTACTAACCTTTGTGGTTGCATGAAGAATCGGCTTGGTCTGTGACCTGGTTCCCTAGGGTTGAGCAAGCCTGGGGCAGTAGGTCCAAGGAAGCATCAGCGTCCCCTTCTTTTGGCACTTCCACACCCAGAGTTATGGCTGGGGCTCGAGCAGCCTAAATGGGATGAACTCTAATCTCTGGACAGTGGCCCATTCTCTATGGGGCTCAGCAGGCCTTCAGCGAGTGAAGTCGAGGCCAGCTCTTATTAAAGGTCTTTCCTCCACAG
Seq C2 exon
CATCCCGTTAGCTGCCGGCAAGTTTGACCGAGAACTGTACTTGATAGGAATTAAAAGACGAATTTCGAAAGAGATTCAGAGACAAGAAGCACTGAAGAGTCAGAGCTCCAGTGCTGTGTGCACTGTGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019039:ENSRNOT00000025764:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=PD(10.0=60.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGTCCTATACAAAAGCCGT
R:
AGACACAGTGCACACAGC
Band lengths:
265-732
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]