HsaINT0081002 @ hg38
Intron Retention
Gene
ENSG00000148384 | INPP5E
Description
inositol polyphosphate-5-phosphatase E [Source:HGNC Symbol;Acc:HGNC:21474]
Coordinates
chr9:136428619-136430413:-
Coord C1 exon
chr9:136430277-136430413
Coord A exon
chr9:136429808-136430276
Coord C2 exon
chr9:136428619-136429807
Length
469 bp
Sequences
Splice sites
5' ss Seq
CAAGTCAGT
5' ss Score
2.74
3' ss Seq
CGCCCCCTCCTCCTCCACAGCAT
3' ss Score
9.84
Exon sequences
Seq C1 exon
GACCGCGTCTTGTACAGAAGCCGCCACAAGGGTGACATCTGTCCTGTGAGCTACTCTTCCTGCCCCGGGATCAAGACGTCCGACCACCGCCCTGTGTATGGCCTCTTCCGGGTGAAAGTGAGGCCGGGGCGAGACAA
Seq A exon
GTCAGTGTTCTCCCGCTCACCTTCCCCCTTGGGCCTGGGGGTCGTGCCGTCGTCCCATGAGCTAAGAGGGTCCCTGTCATCGTGGGGTTCCACTTGGGGCTTTGTTCTGGGACCTTCAGGGCTGTGTTCCCCGGGATCGGTTGGACTCATCCTGGAGCAGGAGAAGGCAGGAAGGGGAGAGGCTCTGGAAAGTGAAGAGAGGCCCAGCTGGGGGGCTGGGTGTGGCCAGCTGGAGGGACGAAGGCCTTAAGCACTCAGGCATCCGCCCTGTCCTTCCTGCGGCTCTGTCCCAGGAACAGGCCTCCGTGTGCTTAGAGGCAGGGCCAATCTGGGCCAGTGCCCACCTAACAGCCCCTCATCCTGGCCCTGGGTGTCCTCTTAAATGCCCCCTCCTCCGGGGCCGGCCCCCTCCTAACGCCCCCTCCTCCTGGCCCTGGGTGCCCTCCTAACGCCCCCTCCTCCTCCACAG
Seq C2 exon
CATTCCGTTGGCAGCTGGCAAATTTGATAGAGAACTGTACTTACTAGGAATTAAAAGACGGATTTCGAAGGAGATTCAGAGGCAGCAAGCACTACAGAGTCAGAACTCCAGCACCATCTGCTCCGTTTCTTGAAGTTTGCTGAACGAGGACTCACAGCTGCAACGTGGGGTGATTGTATTGATCAAAACCCACTGGGAAGGACAAAGAGTTTGCCGCCTTTCGGGGATCCGAGGGACTGTGGCGACCGTGCCTCTGTGCCAGCGTCCCAGGAAGGAAGCCAACCCTGAGCGAGCCTGTCCTCTGTGGCAGGTCCACACGGTGTGGGTGGGCAGGGCTTGGACCCCCGTCTCCATGGCAGGTCCATACAGCATGGGTGGCAGGGTTTGGACCCGCCCAGCAGCACCACGGACCCCAGCCACTCTCGGGGGCAGACGTCAGAATCCGTTCCTGAGCAGCTCCTGTGCCCTGGGGGCAGTCACAGAGCCCCCCAACACCCCCGTGCTCTGCACCAGCCTCTCCCTCCACACCCGAAGCAGGCGTCCATCTGTGTCCTCCTGGCAGCCCCTCAAACACACACCACCCCATGTCACACGGGTATCCAGAGCAAGGCTGGATCTGGGCTAGGTGACCCCTGGGGCCTCAGACCTCTGAGTGGGCCCCAGAGCCCAGCTGAGGAAGCCACACAGCCTCCAGGACGTGGCACGGTTCCCCTCCACTTGGCTGCAAGTCGCCTGCCATGGGGCGAGGAGGCCTGCACCCCAGTATAAGGGCCTCCCCAGCTGAGTAAGAAGCTGCTTCCCCTCCTCTCATAGGCCAAGCCTATTGTGTGAAACCATCTCATGGTCTTGGTGACGTAGACCATTTTTGAAACCGTCTCATGGTCTTGGTGACGTAGACCGTTTGCTTCTTTAACTCCAGCCGCGGAATGACATTAGTGGAACCGGGCTAGGGAACTGCTGGAAGTTCAGGATGCCACCACCTTGAACACCTAGGCCAGGGATCCCCACCATGTCCCGGGTTTCTTTCTTCGAGAGTATAGAACCGTTCATTCTTGCTTTGTGTCCCATTCCATCTCTTGAAAAAATGTAGTCTTTGAATGTGTGAAAATCTAGGGACATTCAATCTAGTCTTTTAAATTATTTTTCCATATTTATATTTTTAAATAAATGCATATATTGAGTCTTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148384:ENST00000371712:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=PD(10.0=60.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTACAGAAGCCGCCACAAG
R:
CGAAAGGCGGCAAACTCTTTG
Band lengths:
351-820
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development