DreINT0081764 @ danRer10
Intron Retention
Gene
ENSDARG00000103926 | inpp5e
Description
inositol polyphosphate-5-phosphatase [Source:ZFIN;Acc:ZDB-GENE-050809-23]
Coordinates
chr5:64378366-64381331:-
Coord C1 exon
chr5:64381195-64381331
Coord A exon
chr5:64379228-64381194
Coord C2 exon
chr5:64378366-64379227
Length
1967 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
3' ss Seq
TCAAGTGTGGTCCTTCCCAGCAT
3' ss Score
3.81
Exon sequences
Seq C1 exon
GATCGTATTCTTTATCGAAACAGACAAGCAGATGACATAAGAGTGATAAAGTACACGTCTTGCTCGTCCATTAAGACGTCAGATCACCGGCCAGTCATTGGCATGTTTCAGGTCAAACTACGTCCGGGTAGAGACAA
Seq A exon
GTAAGCATTTGATTTTACATGTACGGGGCTGGTGCAGGGCAGGGCCGATTAGTTCACCTAGAAACAGTACTGCGTTCAAAATTTAGAAATGTATCAAGAACAAAACATTACATGTTAAAAAGTGTGTGTGTGTGCGTGCGTGTGCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACATACATGCATACAGTTTAAATTATGCATAAGTCAAAATTATTAGCCCCTCTTTGAATTTTTGTATTCTTTTTAAATATTTATTAATTATGTTTAACAGAGCAAAGAAATTTACACAGTATGTCTGATAGTATTTTTTCTTCTGGAAAAAGTCTTATTTGTTTTATTTCGGCTAGAATAAAAGCAGTTTTTAATTTTTTAAAAAACATTTTCAAGTCAAAATTATCAGCCCCTTTTACCTATATATTTTTATATTTTATATATATTTATATATTTTACTTTATCCTGGCAAAGATAAAATAAATCAGTTATTAGAAACAAGTTATTAAAACTATTACGTTTAATTCTGTCTGATTGCAACTGTATATATGGTCTCAAAAAACTAATTTAATTGGACAACATTACAGCCAACATGGCCTTCATGAGCTAAAGTGGCAGTGTGCCAAATTTGTTTCTTTATTTTCTGTAATGTTTGGCTTGATCGAGCTCCTGCCTTTAAGATTTTTTCCAGATGTGCACACACTGATGTTTTATCCCAGTGGTCCAATTAATATGTTATAAATATTATATGGTCAAATATTGTTATGAAGCTACGATCATTATTTTGTGGCTGAATAAAAACTACTGAAATAAATAACGACATCTTTGTGCTTAGTTCATTGGCACTGTGTGTGTTTGTCGTGCTGTTGAAGTGTACTTTGGAGGACGCAACAATGTTGTTAGTACCTGTCTGGGTTTTGAATGTTTCATCTGTCTATGGAGGGTCCGAGAGCTCAAGGATTTCTTCAAAAATCAATTCTATTGTGGTCTAGCGATGATTGTAGGTCTCAAGTCCCATTCAGATTGCATTTTCTTTTCTTTGATTTTTGCTTGACGTTGGGTTTTGTAGAGATAAGTCATTGATAAATGGTCATCCAGACATAATATTCAATTGTGTTATTCTTCTCGTGTAGTGTGGCATAGTTCACAACTGTCGAAGCCATATTTACGTCAATAAAGCCAGCAATAAAAATCTTGTAGGAGCTTTATGGGTTTGTAAGGAAATGAGTGTGAATAATTAAAGATCTCGTGAAGTGCTTTGAAATGTGCTTTTTTTATTGGATGTTTGATGTAATCTCAACTGAAACAAGAAGAGAGGGTGGAACATAGTGTAGCAAAAAAAGCAGCCAATAGCGTTTTATTTCATCACAGCTCTGCCAGTGAGAGCAGTTGAGCTCAAGCGCATCAAATGAAAAGCAAATATGAAACGTTTTGAAGGGGGAGGGGCTTTTTAGACACTAGAGAGCATTTGATTGGTCAAGATTTGATGAGAAACTGATGTATGAGGTGACGTCGAAAAAAATTATTGACCCATTTAAGCGGAAGTGATCAACTGCAAGCTTTACAGGTTTCTATCAGTTGTATATCTTTTTATAAGCAAATTTTGTCACTGTTTTGGAGCGCACTAGCTCATAGATATCTAAAAAACTAACAATACTGATACTAACATATAAAATACTTTATTTTAATTTCATTGGACCTTTAATGACAATTAATTTTAAGTAAAACTAACCCTTTAAAAAGCATTAGTAAAGAGATGACTTCTTATCACCGTATACACTGAGCAATGTAACGTTCTGCTCAATTTATATTTTTTTTTTCGTCAGTTGAAGTGGAATGTAATGTTTTGACTTTGTGTTTACATTTGATGGGATGTTATTCGTGCATTTTAATAAACCACTAACTCAAGTGTGGTCCTTCCCAG
Seq C2 exon
CATTCCTCTGGGCGCTGGCCTTTTCGACAGGAGTCTGTACCTCGAAGGAATCCGACGGAGAATCACCAGAGAGCTGAAAAAGAGAGAGGCGGTCATGAAAAACCAGAACAACAGCACAGTCTGCTCCATATCCTGATCCGGGACCAGTGTGCGACAGCCATAAGGTGCTAAAACTGATCATTTTCAAACACGCCTGGTGACTCGGAAAGCTGGACTTTCAGGACCGAGGGATAACTCGGTTTACTGTCACTTAAGTGCACAGCCCGCGGACCAAAGCACTACAGCTGGTGTTGGATTAAATATATAAAAACATGACTTTATTCCTATGATTTAATCTTTAAATTATACTGACCAGAGTAAAGGAAGTTAACAGTACTGTACATTCACTATTCCTAATGCGTTTCTTTGTTTTACTTCATTTAACTTGCAAGCTGAAACAGTCTGTGCTGTGTATGGTTTCAATGTATAGCATCTCATGGCCTTGTTAAAGGGACAGCACACCCAAATATGAAAATCGTTTACTCATCCTCTCATTACTCAGTTTCTCTCTTCTTGTTTTTTGTTCAACAGAAGAAAGAAATTGATTGAAACGACTTGAGTTTGAGTAAAACAGTGTGAGAATTTTCATTTTTGTACACGCCGTCCCTTTAAATGATTACACTACCTTACAGTTGTAAGAGCAACAAATAATAGCTTCACTTCTAGTTGATCATTTGGAAAAGTGGCAGAGGGTCAATTTTTGTTCAATACTGACCTATTAAAACTTGCATGGACCCAAAATTCTCAGAGTAATCAGTCAAGTTTGGTGAGGGAAAAATCCTGGTTTGGGGTTATATTCAGTATAGGGGTATGTGAGAGATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103926:ENSDART00000162511:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=NA C2=0.133
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=PD(10.0=60.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATCACCGGCCAGTCATTG
R:
CACCAGCTGTAGTGCTTTGGT
Band lengths:
348-2315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]