MmuINT0082301 @ mm10
Intron Retention
Gene
ENSMUSG00000026925 | Inpp5e
Description
inositol polyphosphate-5-phosphatase E [Source:MGI Symbol;Acc:MGI:1927753]
Coordinates
chr2:26396249-26398692:-
Coord C1 exon
chr2:26398556-26398692
Coord A exon
chr2:26397972-26398555
Coord C2 exon
chr2:26396249-26397971
Length
584 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
3' ss Seq
TAAAGGTCTTTTTTTCACAGCAT
3' ss Score
5.76
Exon sequences
Seq C1 exon
GACCGAGTCCTATACAAAAGCCGTCACAAGGGTGACATCTGTCCCATGAAGTATTCCTCTTGTCCTGGGATCAAGACTTCAGACCACCGTCCTGTGTATGGCTTGTTCCAGGTGAAAGTGAGGCCAGGACGAGACAA
Seq A exon
GTAAGCTTTGGGGGCTCCTGCCAGTTCTTGGATAGGGTAACTTTTGGGGGATGGATGGCAGGCTTAGGCGAGGCCTAATGTTCCACGCAGCCCCTAGGCTATTATGAATCTGCGTCCATCTGAGCCTCAGTCCCAGCTGCTTCTTAGGGCATAACTCCCAGGTTACTAATCTTTGTGGTTGCATGAAGAAACGGCTTGTTCTGTGACCTGCTTCTCTAGGGTTGAGCAAGCTCCTGGAGGCATCAGCATCACCTTCTTTTGGCACAACAGGGTTGTGGTTGGGGCTAGAGCAACCTAGATGGGACGAAGAACCCTAACCTCTGGGCAGTGGCCCATTTCCTATGGGGCTCAGCAGGTGTGCAGCTGAGTGAAGTTGAGGCCAGCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAAAAATCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAACGCCACCACGCCTGGCAAAGCCAGCTCTTATTAAAGGTCTTTTTTTCACAG
Seq C2 exon
CATCCCATTAGCTGCCGGCAAGTTTGACCGAGAATTGTACTTGATAGGAATTAAAAGGCGGATTTCAAAGGAGATTCAGAGACAGGAAGCACTGAAGAGCCAGAGCTCCAGTGCAGTTTGCACCGTGTCCTGAAGATTCCAGACCAGGACTGGCCACAGCAACGGGGGCCAAGGTCACTGCAAAGGATGGGCTTCTTCTCAGCTGCTCCTGTAATGCTGGGATTCTAATCCACCACGGCCAGGGGCTCCCTGCTCTCACCACAGACCCAGCCCTCAGGACATTTATACCATGTTCCCACAGGCACATGGCAGGGCATGTGGACACCAAGCAGCAGTTTTGTCCTCAGGAGTAGTCCAGACTTCTTGCCCTTGAGCACTGCTGTCTCTTCAAACTCCTTTTATTTATTCCTGTTCTCATGCTAGAGCCCAGGTTCTCCATCTGTATCCTCCTAGTAGCTCCTTCCCTCCAGGGAAGGATCAGGCAACCTCTGGTATCCTAGATGCTCAATGCCTAGAACCTGCCAGGACTTCAATTCTGGGATATTCCCTACAGACATTTTGACAGGCTTTGAGGTTCTACATCCTGGTCCCAGGCTCCCAACCCCCAGTTGAGTAGGGACCTCTCCACTCTACAGGCCAAGCCTAGCTATATTAAACTCATAGTTTTTAGGAGCTTCAGACCATTTGCTTTTGTGCTGCTAGTCCCGGAAAGGCATGAGAAATTGTTACCAGACAGCACCTTGCTGGGTTTCACTCCTTGAAGAAAGCTTAGGAGCATCATTGCTCTCAATCTTACCCCACCCCTTCAGACATAGCCTTGAATGTACAGACACCTAGGGGCATCCACTCTAGTCTTCTAAATCATTTATTTTTCCATATTTATATTTTTAAATAAATAAGGATATATTCAATTGTAAACTCTTTCTGGCCAAAGAGTGAACCTTGGAAGAAGTCTGCATGCATCTTGGGGCCTCAGGACACCCCAGGGTTTTAAAAGGACATAGAAGTCAAAGGCCAAACATTTGGTCTCAGCTGTCACCTGCTACTCAGTCCCATCCCAGGTCTTTCTGCTAGGTACTGTCCCTGCTCACAGCCAGAAGCAGCAATAGCTGGAAAAAGTGACGACTTGGGACTCCAGTGAACCATAATAAACCAACGAATAAGGTGAAACTCAACAGCATCAGCTTCTCCAATATGGAAAGTCACCTGCTTCAATAAACCACTGTGAACTGCAAATTCTACTGGGAAGACAGCCTTTTCTCTCCCAGACAGGCTGCCCTGGACTTCATAATCCTGCCTCAACTATTCCTGGCTTGAATAAGGTTTGATGTGGTAAGAGTTCCAGACAGGTTTCTCTGTAGCCCCGGCTGTCCTGGAACTCTCTGTAGACCAGGCTGGCCTCGAACTTGGAGAACCACCTGCTTCTGCCTCCTGAATGCTGGGATTAAAGGCGTGCACTACCACAGCCCAGCAGTTTGGTGCTTCTTTGTGGACATTCTCTGGCACCTTAGAAAAGACTGAGGTAATCCTGGAACTTCCCAGTTTGGCCCAAGATCAAGATCATAAAGTCTTAGGGGTCGGGGGGCAAAGTACAGCCATAGCAATTTACATTTAGATAGCCTTTACATTTAGAGGGCATTTCAGTTGGAAAAGTTAAACACGTAAACTAGTGCAGATGAAGTGGGAAATTAAAACTGGACTTGTAAATAATTGTGAGATACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026925:ENSMUST00000145701:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=PD(10.0=60.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACTTCAGACCACCGTCCT
R:
TAAATGTCCTGAGGGCTGGGT
Band lengths:
350-934
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types