BtaINT0078459 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21780128-21783394:-
Coord C1 exon
chr22:21783336-21783394
Coord A exon
chr22:21780290-21783335
Coord C2 exon
chr22:21780128-21780289
Length
3046 bp
Sequences
Splice sites
5' ss Seq
AAAGTATAT
5' ss Score
1.45
3' ss Seq
TGACCTCTCCCCTCAGTGAGGAG
3' ss Score
-6.9
Exon sequences
Seq C1 exon
GTGCTCTTGACTTTGAACACATTGAAGAACAAGCTGAGGGCATCTTCGGAGGAAGGAAA
Seq A exon
GTATATTTTCAGTTTCTGTTTTGTAGGTGGTTCTGAGATGGAGGAGGCTCCTCTCCATTAGCTCTCAAAGACTTCTCCTTGGACTCGGAAAGGTTTAGTCCTTGGGTTTAGGTTCTTTGCCTCCTCACTTTATAACTTCTAGAACTCAGGTCAGAGTAATCTTAGTTGGCTTCATATATATGTGTTTCCTGCCTACAGTAGAAAGAACTGAAGGAGGTTTCTCAAAGTATACACATTACAAGACTTTTTTAAATGGTGAGGAAATAGGGTTGAAAGAAAGAGGGGGCTCAAAACAGAGTGCAGAAAGCATGCTCATGGGTGCTACTGGGCGCAGTCACCCCCAAGCTCTTTAGGAGCCAAGCAGCCACAAGAATAAAAACAGGCATGCAGTTCTTTCATTGTCTGTAACCTGAAATTACTGTGTGAACCCTTTCCAAAAAGATGAGATTGCTCACTGTTGACTGAAAACATCATTATGAGACTCAAATCCCTGTAAGGCTCAAACACCTGCAAACTTGGTATAAACACTCTGTATGTATAACTCTTGCTATATACACATTTGCTTTGGTTATGTACTGCTTTTGACAATCAAAACTTAATGGATTAAGGACTTCCCTGGTGGTCCAGTGGTTAAGAATCCTTCTGTCAGTGCAGGGAATACAGGTTCGATACTTGGTCGGGGAAGATTCCACATATCACGGGGCATCTAAGCCCATGTGCTGCAGCTACTGAAGTCCACTCTCTGGAGCATGAGAGTCACATCTACTGAGCCCACGCTCACACACGATAACAAAGACCCAGGACAGCTAAAGAAAAATGGATTAAAACAGTCATTTTATTGTCTCTCACAACTCTGTGGTTGACTGGGGCTCAGCTAGATGGTTCTTCTGCTGATCACTGTTGGGTCCGTCATGCGACCATAGTAGCTAGTGATTGGGGTTGGCATATCCATGTTGCTGTCTTTGCATTTCTGGCTTTTTGGAGGTGATACCTTTAAGGCTGGGACTTCTCTCTTTTTCTCTGCACATGGATATTTTTGGCTTCTGCATAGCTTGGTAACTGGCTCTATGTGCAAAGGCCCCAAGAGGCTAGACCAACAGTGTACAAGCACCAAGCAAGCCTCCGCTTGCATCATGTTGCTGATGTCCTATTGGTCCAAGCAGATCGCCTGGCTGAGCCCAGTGTCCATGTGGGAGGAACCTACATAAGGGTGTTTAGACCAGAGAGGGTGAACTGATATTCACTGTCTTAGTGCTTAATGTAAAATCTGTGAAGTTTGAATCAGCAACATTATTTACTCTATGGAAGAGATTGCTGTTCTGAAACTCAGGGAGTTTTGAGTTTAGCCTGGTGCCACTTCAGTCTGCTGGGTGGTGTCTTGGCTCTCTACTGCTTTCCTGGTGTGGAAGGGCTGTGAAAGCTTCTTCACACCTTTCTGGAGCGCATAGCATGAACACAGGATTTATGTACTAAGTCCTATCTATGCCTCCCTTGCTGGTCTGCAGCCATGAAGGTCTCAGCATTTGACCTTCATTTGATTGTAAACACAATACAGGCCCAGAACCTGACTGCCAGTGCTCAGGTTCACGGTGGCCTGCCGTTAGCGTCAGGACTTGCTTATTAAATTTTTGGTTGTGTAAGTAGCACACAATCCGCGTAGCGTAGATCTTGGGAGAAGCCTTGATAATATACTGATTAACCCCAGCTAGGAAGCTAGAATAGCACTGAGTGGGGATGACTCACGGCAACACTTCTCAAAGTGGGGCCTGAGGGACCAAACTGCTTGCTGCCAGTTTGAGATGAGATAAGTGAATCTTTGGGCACTTTCATGGCCACTGGGGGGGCTTCCCAGATGGTGCAGATGGGCTTCCCTCATAGCTCAGTCGGTAAAGAATCTGCCTGCAATGCAGGAGACCTGGGTTTGATTCCTGTGTTGGGAAGATGCCCTGGAGAAGGAACTAGCAACCCACTCCAGCATTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGAGGGCTCCAGTCCATGGGGTTGCAAGAGTCAAATACGACTTAGCGACTAAACTACCATACCTGAATAGTCTAGTGATTTTCCCTTTTTCCAGGTGGTGCAGTGGTAAAGAATTTGCCTGCCAATGTAGGAGATGCACGAGGCAGGTTCGATCCCTGGGGAAATTAAACGCCGCCCCCCGCCCCCCGCCCCCCCCCGCCTGGAGAAGGGAACAGCTACCCACTCCAGTATCCTTGCCTGTAGAATCCCATGGACAGAGGAGCCTGGAGGGCTACAGTCCATGGGGTCGCAAAGAGTCGGACATGACTGAGCACACACATTTGTTGGCCCCTGTGACCCCATCCAAGTGCACGATCAGGGATATGGTACAGGCTAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATTCCATGGACAGAGGAGCCTGGTAGGCTGCAGTCCTTGGGGTCGCTAAGAGTCAGACACGACTGAGTGACTTCACTTTCACTTTTCACTCTAATGCATTGGAGAAGGAAATGGCAACCCACTCCAGCGTTCTTGCCTGGAGAATCCCAGGGACAGGGGAGCCTGGTGGGCTGCTGTCTCGGGTCGCACAGAGTTGGACACGACTGAAGCGACTTAGCAGTAGCAGACCTCAAAAACCTGGCCCTCCACCACAGATGGTTTCTTGGGACTAGCATCTTAAATAAAAAACAAACTAGTAACTCGGGAGAAACACAGCTGTGTGCGGCTCTGAAACCCCCAGCAGCAGAACATCTGGTGGGAGAGTGTTTGCAAAGCCAGGCCTGTCACTGTGGGAAGGTGGGGACTTTGGTTAAACACTGGGCAGCTGTGACACCGTAACTGTCCCCTCCCCTCAGAACACAGTTGAAGATGAAACAAGATGGTATTGTTAAAGGAGTTATTTAATACCCAGGTCTGCTGAGGTCGGCCATAGAGTTGGGGATCTCATGAAGTGAGGTGTGTCTGGGCCCATGGGTGCGGGTGGAGGCTGTCTGTGACTCACGTGACCTCTCCCCTCAGTGAG
Seq C2 exon
GAGAACACCCCGCTGGACCTGGATGACCACGGCGGCAGAACTTTCCTCCGAGTCCTGCTCCACTTGACGATGCACGACTACCCACCCCTGGTGTCGGGGGCCCTGCAGCTCCTCTTTCGGCACTTCAGTCAGAGACAGGAGGTCCTCCAGGCCTTCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455:ENSBTAT00000054653:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=NA C2=0.093
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]