DreINT0083638 @ danRer10
Intron Retention
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35670212-35671952:-
Coord C1 exon
chr11:35671901-35671952
Coord A exon
chr11:35670378-35671900
Coord C2 exon
chr11:35670212-35670377
Length
1523 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
AATCATTTGTCTGCACTCAGTGA
3' ss Score
5.54
Exon sequences
Seq C1 exon
CTCTGGACTTTGAGAACATTGAAGAGCAAGCAGAAGGAATTTTTGGTGGAAG
Seq A exon
GTACAGATTAATTTCTCAAATTAATCAAAAAGTTTATCCAGTAATATTGGCAGCATTGGCATATGCGAGCTTTATAGAAATATGTTATTTACCTTTGGATCTTTTGCTCAAAATACAAAAATAGAATATAAAACTCTTGCGAAAAGGACAGTTTTATCAAAAAGGAATACAATTAAAATGTTACAAATGATGGCAGTCCTATAAAGTCATACGAGCAAAATATTTTTTGAATTATATTCCCATTTGTTTTATTGCATTTTTTTGTACACCTGGGTGATGATGAACAAGATATTGTTTCAGGAAGTAACACACAGGCCAAACACAATCAGGCATTCATCACAATGAGTAAAATAGTTTTGCTACACTGTAAAAGTGAAACAAAATAGAAAATATATACACTGTAAAACCCAAAAAGTTGAGTAAACAAAAAAAACTAAAGGGTTAGTTAAAAAGGGTTGGTTAGTAAAAAAAAAAAAAAAGAATCCTAATGAGTACTGTGAACTTAATCCATCTGAGTAAACGAAGCAATTTGAGCACAGCAAAACCCAATAAATGAAGAACTCAAACTAACTGAGTACTGCAAAACCCAATAAATGAAGAACTCAAACTAACTGAGTACTGCAAAACCCAATAAGTTAAGGCAACCAAAAGCCGTTTGAGGAAACCGATTGCAACAACTCATTTGAGGTAAAGTAATCTATACGAGTACTGTGAACCCCATTTAAGTTGAAGTAATGAGATATTTAATTAACTCATTACCTTTAACTGGGTTTAAAACTCTTTTTAAATGAGTAGAATTAACTCTCAGTTAATTTTGAGTTAACTACATTCATTTCATTTGATAATGGTGACTGTTGGGTTTTACAGTGTAATTGTAAAAAAATGATACAATAAAAGGTTGTAAAGGCAGCTTTACAAAAGGTGCACAAATTAAGTTAGTTTCAATCAAATACAAGGTATTATATACCCTAAACATAGTTAACCTGCAGTTTTATGGCAAATAGGGAATGATTATGTGTACATGTTTGATGAAGTCTTTTAAGTGTATGTGTTGTCCTCGAAGTCTAAGACTAAAACTACAACTACAAAGTCTCTAAAACTGCGATATGTCCTGACAAACATTAGAACCAAAGGTGATTCATTAAAAAAAGGCTCTACTCTCATCCAAAAACAAACTGAAGGATCTTATTTATTTTTATTTTTTTGATTGTTTAATATTTTAGGAAAAGGCTTTGAATGTTAAACAAAAATACTTTTTAGACTTTAATATATACAATAATATTATTACAATAATACACATTCAAGTGGATTGATCATGAAACAATTAAGTTATTGCAAAAAAAAAAAAAAAAATCAAGAACTGTGTTGTTTTAGCTCCTTTTAAATAAGTTGTCTGAACAAGCACAAACATCATTTTTTGAGTTCAGCCTTCATTGCTTATATTTACCAAAGGTGCCAATATTAGTGGAGGTCACAGTAAAATCCCATGTAAGCACTGTATGTAATCATTTGTCTGCACTCAG
Seq C2 exon
TGAGGAGAACACACCTCTGGATCTTGATGACCACGGTGGCAGAACGTTTCTGAGGGTTTTGCTTCATCTCACCATGCATGACTATCCACCGCTTGTGTCCGGAGCGCTTCACCTGCTCTTTAGACACTTCAGCCAGAGACAAGAAGTGCTCATGGCTTTCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149:ENSDART00000031993:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=NA C2=0.143
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACTTTGAGAACATTGAAGAGC
R:
GCCATGAGCACTTCTTGTCTCT
Band lengths:
206-1729
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]