MmuINT0084434 @ mm9
Intron Retention
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108342525-108344064:+
Coord C1 exon
chr6:108342525-108342579
Coord A exon
chr6:108342580-108343898
Coord C2 exon
chr6:108343899-108344064
Length
1319 bp
Sequences
Splice sites
5' ss Seq
AAGGAAAGT
5' ss Score
2.81
3' ss Seq
CCTTCCCTGTGTTCCTGTAGTGA
3' ss Score
9.09
Exon sequences
Seq C1 exon
GTGCTCTTGACTTTGAACACATTGAAGAACAAGCGGAAGGCATCTTTGGAGGAAG
Seq A exon
GAAAGTGTGCTTTCATCGTGTCCTTGTGTGGTAGTTCTAGAGTGTGCCGGGCAGCTCTTCTGTAATTTGCCCAGGGTTTTTCTTGAGCCTACTGTTGAGCCTTCAGGGTCAGGTTCTGTTTGGAATTACTAAGTCACAGAACTTAGGTGGTGCACTGTGCATGCATGTGTTTCCTGCCTAGGACAGAAAAGATTTACGGTGTGTGTGTGTGTGTTTCCTGCCTAGAACAAAAAAGATTTAAGGTATCCTAATATATAGAGAGATTTGCAAGGTTATTTTTATATGATGTGGGTCAAAAGAGTAGAGAAAAGGGGTTCAAATCAGATAGAGGTTGTTAATGTCATTGACTTCCTCCACTGATAGCCAAGCTATGCAACAACAGCAAAAATAAATAACAAAGAAAACCAAAAGCAGCAAAAGATAAAACAAACAAACAAACAAACAATGTATCCTTTAATCATTCCTGATGAGAATGCCTCCTAATACCACTGATCTTAGTTTTAACACAAAACATTATTAGTATAAACTCACACATCTGTAATAAATATCCTAAGGGCATAGTGATTATAACCAGCATACTTGGTTTGACTGTTTATTGCTTCACAACACACATCTCCAACAGTCTTAAGAATTTGAGCCCCAAGTATTTCTCCCAGCTGTCTGGGGTGACTGGATCCCCGCCGAGTGGGTCTAGTCACTGTTGGGTCTGCCACACAACTGTCGTGGTACAGTAGCTGGGACTGATACGCACTGGATGTTTTGCTTATATTCCTGGTGCTGATAAACGCACATACGTTATGCTGAGGTTTCAGCCTTGCTCCACACGGTCAGTTTGTGTTCCCTTACAGAACGAAGGCTGATTCCCAGAACAGATGTTGCAAGAAGACAAGCCAACAGAAAGCAAAGGCTTTCTAGACTGCAGACTAGAGCTTTTCAAAACTAGTTTTATTTTATTACCAGATGATTTAATAAGTGCTAAGCTACAGCATTTTAAACAAAAAGCTTAGAAGGAGTACATTTGTTTTAGATTTTGGAGCACAGATGAAGCCCAGTGGAAGAAAGCTCTAAGTTAGGTCTCCAAATCTCAACATGTTAGTCCTATTGGCTTAGGGAGTTATAACATCGTACTTGTCCCCTCTTCTCACAGAGGAGCTGAGGGTAAAACACAATTGGCTTATAAAAAAGGAGCTGATGAGCAGCGAGGCTCCATTGGATGGAATAGAGTTTGAATTGTCGTTCAGCTCTGCCGGGCTCATGTGCATGATCCTGGGACTGTAGCTTTACTTGGTCTCCTTTTCTCCTTCCCTGTGTTCCTGTAG
Seq C2 exon
TGAGGAGAACACACCTTTGGACCTGGATGACCATGGTGGCAGAACCTTCCTCAGGGTCCTGCTCCACTTGACAATGCATGACTACCCACCCCTGGTGTCTGGGGCCCTGCAGCTCCTCTTTCGGCACTTCAGCCAGAGGCAGGAGGTCCTTCAGGCCTTCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-Itpr1:NM_010585:26
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.369 A=NA C2=0.110
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCTTGACTTTGAACACATTGA
R:
CTGTTTGAAGGCCTGAAGGAC
Band lengths:
221-1540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: