GgaINT0021963 @ galGal3
Intron Retention
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19091211-19092675:+
Coord C1 exon
chr12:19091211-19091265
Coord A exon
chr12:19091266-19092509
Coord C2 exon
chr12:19092510-19092675
Length
1244 bp
Sequences
Splice sites
5' ss Seq
AAGGAAAGT
5' ss Score
2.81
3' ss Seq
TTCCCACACTCTGTTTCCAGTGA
3' ss Score
8.9
Exon sequences
Seq C1 exon
GAGCCCTAGACTTTGAACATATTGAAGAGCAAGCTGAAGGAATCTTTGGTGGAAG
Seq A exon
GAAAGTATCTCTTCAGTAGCGCTAATCAAGATGTAGCTCAGCAGTTCCCAGGCTGCAGTCCCCAATGTGCTCATAAGGACTGTGGATTGCAATTGCAAGTGAGGTGGTAAACGGAAAAAGATGGGGAACAGCTGCCCCAGTTGTGGAGGCTTTGTTTTCCTGAACTACCCTTGATACAGCTTGAATAATGTCCCTTTAAATTAGAAGCCATGGGGAAGGTACAGGTGGTCCTTCAGCCAAAAAAGATCTTCGCTGCAGTGCTTTGCCTGTGTGGGTGAAAGCAAAGCTGGAGGATTAGTGTGTCTAAGCTGAGTGCTGCTGTAAAATCTTAGGTGGAAAAGTTTGTGCAGGGAAGGATTGGGGCTTCTGAGGCAGATCTGCTTAGCCATACTTATTTTTTATAATGCAGAATTAGATGGCACATGCATGACAGAACAAAACAAGCCTCGTCTTCAGTACCTGCTTTCTTTCTGGAGTTGCTTATGTGCTTTCTTAAATCACGGGAGGTGAAATCAGTGGCAGACATAAAGTACTTGGGCTTATCTTGATATTCCACCCACTCATTCTGTTGGAACACTGTGAAGGTGTATATTCTAATAGCCCTTAAGCTGTTCAGAGAGAGGTGCAGCTCCGTTCTGTAAACCTAACATAACTGATTTCTTAAATGAGGGAAGAGATTCATTTACAGAATTAATAACCTGGATTGGTAATGCAAGTGTGTGTATTTGGTTGGAAGCAGAATTTGAGAAAGATTTGGAGTCTCACTGTTAAGGAAATCAAAAAGGGATATTTTATCACCTACAGAACAGAAATGTGGGGAAAAGATAGCAAAGAGGAAAATGAGTGCTTGATGTAATTGGTATTGCAACCTGGATGTGGAAGAATGGTTGTTTTTGTGGATAGAAAGGATACTGTTAGGAATGGGCAGGAATTATTTGAGCAGTAGGATAAGACTGAGATGGGACAAATAATTAATCATGATTTGTCCCTGAAAAACATAAGTTGCATGCAGCTGCGTGCTGAGTGAACTGTGAGTAATGACATTCTGGAGTAGTCTTCCAAGTAAGCAGCACACCAAAAGAAAAAACAAATCTGTATGTCGTTGCATAGCATTTCATTTGATAAATATTCTACTCACTTAAAAAAAAAAAAGAGGGATTTTCTCCACCACAGGATGGTAGTTTTAGAAACCTGCTGGAATAATAAGCCCAATATTGTAGTAAATTCCCACACTCTGTTTCCAG
Seq C2 exon
TGAGGAGAACACTCCGTTGGATCTGGATGATCATGGTGGCAGAACATTCCTCAGAGTTCTGCTGCATTTAACGATGCATGATTACCCTCCCCTGGTCTCCGGAGCACTCCAGCTTCTCTTCCGGCACTTCAGTCAAAGACAGGAAGTTCTTCAGGCTTTTAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294:ENSGALT00000013505:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.316 A=NA C2=0.138
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCTAGACTTTGAACATATTGA
R:
AAAGCCTGAAGAACTTCCTGTCT
Band lengths:
214-1458
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]