RnoINT0076639 @ rn6
Intron Retention
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140425780-140427431:+
Coord C1 exon
chr4:140425780-140425834
Coord A exon
chr4:140425835-140427265
Coord C2 exon
chr4:140427266-140427431
Length
1431 bp
Sequences
Splice sites
5' ss Seq
AAGGAAAGT
5' ss Score
2.81
3' ss Seq
TCTTCCCTTTGTTCCTGTAGTGA
3' ss Score
8.75
Exon sequences
Seq C1 exon
GTGCTCTTGACTTTGAACACATTGAAGAGCAAGCAGAAGGCATCTTTGGGGGAAG
Seq A exon
GAAAGTGTGTTTCCATTGTCTTATTTTGTGGTAGTTCTGGAGTGTGGTAGGCAGCCTGTCTGTAAATCTCTAGGGTTTTTTGCTTGCACATACTATTCAGCCTTCAGGTCAGCTTCTTGTACTGCTCGTTTGGAATTACTGAGGCACAGAACTTAGGTGGTGAGCAGTGCATGTGTGCATTTCCTGCCTAGGACAGAAAAGATTTAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCTGCCTAGGACAAAAAAGATTTAAGGTGACCTAATATGCATATATTTGCAAGGTTATTTTTACATGGTGTGGGTCAAAGAGTAGAGAAAGGGGGTTCAAATCAGATAGAGGTTTCTAATGTCATTGACTTCGTCCACTGATAGCCAAGCTATGCAACAACAGCAAAAATAAAAGTCAAAGAGTAGAGAAAGGGGGTTCAAATCAGATAGAGGTTTCTAATGTCATTGACTTCATCCACTGATAGCCAAGCTATGCAACAACAGCAAAAATAAATAAATAACAAAGGAAGCTACAGCAGTAAAAGTAAATAAATTTTAAAAAATACAAAGTATCCTTTAATTACTCCTGATGGGAACGCCTCTCATATCACAGGCCTTAGGTTAAACATAAAACACTATTAGTATAAAACTTAGTATAGAATTAGTATCTACAATAAGTAACCTAAGGCCACCGTGATTATAACCAGCATACTTGCTTTGACTGTTTATTGCTCCTTAACACACATCTCCAAAAGTCTTGAGAGTTCGAACACCAAGTATTTCTCACAGCTCTCTGGGTTGACTGGAGCCCGGCTGAGCAGGAGCGTGGCTGAGCGGTTCTAGTCCTGTTGGGTCGGCCTTGCGACTGTTGTGATACAGTAATTGGGAAGGGTACACACTTGCTGTTCACTCATATTCCTGGTGCTGATGAAGGCATATGTGTAAAGCTGAGGTTTCAGCCTTGCTCCACACCGTCAGTTTGTGCTTCTTCACAGAGCCATGGCCGATTCCCAGAACAAATGTTGCAAGAAGACAGGGCAACAGAAAGCAAGTGCTTTCTAGATTGCAGGCTAGATACTTTCAAAACTGTTTTTCTTTTATTACCAGATGATTTTAATAAGTGCTAAGCGACAGCATTTTAAACAAAAATCTTAGAAAGAGCACGTTTGCTGTAGATTTTGGAGCACAGATGAAGGCCAGTGGACAATCACTGTAAGTTAGGTCTCATGAATCTTGTAATGTTACTCCTGTCGGCTTAGGGAGTTGAAACATTGTAATCGTCCCCTCTTCTCACAGTGGAGCTGAGGGTAAAACACAAAAAAGCTGATGAAAAGTGAGGTTCCATCAGGGCTCACATGCATGGTCCTGGACTGTGGCTTTACTTGGTCTTGTTTTCTTCTTCCCTTTGTTCCTGTAG
Seq C2 exon
TGAGGAGAACACACCTCTGGACTTGGATGATCATGGTGGCAGAACCTTCCTCAGGGTCCTGCTCCACTTGACAATGCATGATTACCCACCCCTGGTGTCTGGGGCCCTGCAGCTCCTCTTCCGGCATTTCAGCCAGAGGCAGGAGGTCCTTCAGGCCTTCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104:ENSRNOT00000040255:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.420 A=NA C2=0.141
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCTTGACTTTGAACACATTGA
R:
CTGTTTGAAGGCCTGAAGGAC
Band lengths:
221-1652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]