BtaINT0078508 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002313 | ITPR2
Description
inositol 1,4,5-trisphosphate receptor type 2 [Source:RefSeq peptide;Acc:NP_776794]
Coordinates
chr5:83593771-83597637:+
Coord C1 exon
chr5:83593771-83594022
Coord A exon
chr5:83594023-83597492
Coord C2 exon
chr5:83597493-83597637
Length
3470 bp
Sequences
Splice sites
5' ss Seq
TGAGTATGT
5' ss Score
4.43
3' ss Seq
AATTCTTTCTGTGTTCCCAGATA
3' ss Score
9.23
Exon sequences
Seq C1 exon
GTACCAGCTAAATCTCTTTGCAAGAATGTGCTTGGATCGCCAGTATCTGGCCATAAACCAGATTTCTACACAGCTCTCTGTTGATTTGATCCTGCGATGTATGTCAGATGAGAGCCTGCCTTTTGACCTCCGAGCATCCTTTTGTCGCCTCATGCTCCACATGCATGTTGACCGGGATCCCCAGGAGTCCGTAGTGCCTGTTCGCTATGCCCGGCTCTGGACAGAAATCCCCACGAAGATCACAATTCATGA
Seq A exon
GTATGTTTGGGAGCATTTCTCGATGACTTTAAATTCAGCTGATGAACTCAAAATCAAATGTCTTCAATTTCTTAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGGTATCTCTTGGAGCTCACTGGGTGGACTCAAGGGAGTCAAGCCTCCTGTGGCGTTTGGAGAGAGGTCGCGAGACTGGTCTCTAGGCCATGCAGGAGACGAAGGCCCTCATCTCTCGATGACGGGGGAATCTCGGGGTTGTTCTCGAGCGGCGGCCCCAGGGTGCGGTTTCTCACGAGGTACGACGGCGAGGTCAGTGAGCCTCTCGTGGGGCGCCAGGGACGTCGGGTCTCCATGCGAGTGGCGAGGGGGAGCGCGTCATTGCTCCCGAGCCATGGTAGGGGAATCTGGCCTCGAGACGTGTTGAAGAAGGTCTCTCGAGGGCTTTCTCGGGTTGAGGCAGGAAACCCTGGGTTCCCTCGACTTGTGCAGGTGACCTCAGGGGGCTTCTCATGGTGGCTCTGAGAAGCCAGGGAAACTGGAGGTGGGAGGGGCCTCTCGGGACCCCACTGGGTTTGGTGCATTGGAAGAGGGCCTCATCTCCAGTTGAGGCAGGAACCGCAGGGTACCTCTGATTTCAGACTCCGATCGCAGGGTCCCTGCAGACTGGGGACAGGAGAGTCAGGCCTCGTCTTGGGTTGAGGCATGGAACTCCGCTTGCCTCTCGAGATGTCCCCGGGGAGAGAGGCCGCTTGTCGAGCTGTATTTGGAACCTGGGGTTTTTTCCGACCGATGCACGGAAAAACTGCCCCTTCGTGTTGACTTCATTCACAGGGTGGAGTTCGGAGAGGTGTCCGGGCATCGGGTTCTTATCAAGAGGGGACCGGGAAATCGGGGTCCTACGGAATGTGGAACCACCCACGAGGCCACGTCTGGAATGTCTTCGTGAGACCGGCCTCATCCTGAGGTGCGACCGGAAGGTCGGGAACCCCTTCCAGACAAAGCAGGGGAGTCGACCCTCCTGTCCAGATCAGGAGGGGAGAAAGGGCTCAGAGGAGGGGTGCCGGAAAACCTCGGTGTTCCTCTCGAGGGAGACCGGGATTTCGGGGAACTTGTGGGTCGCATCAAGGGTGCCAAGTGCCCTTTCGACCTCCAATTCCTAACGTGGGACTTCTCCTGAGACGCTGTAGCGGGAAAGGGCTTCATCTTGCGATGACGGGGGAGCCACGTGGTTTTTCTCGAGTTACGGCGGGATTCTCGAGTTACGACGGGGAATTCAGGATGCCTCTTGTGTTGGCCCAGGCAAGTCCAATCTTCCATTCGAGTTGCGAAGGAAAGCCGGGGATTGCTCTCGAGTGACTGCAGGGCCAATAGACCTCATCTAGGCTTGTGTCCAGAAGCCAATGTTCCTCTCCAGGGGCGACAGGGATCTCGGGGTTGCATTCCAGACGCACCCGGGGAGACAGGCATTCATCTCGAGTGGAAGCCAAGAACCCCGCTCTGCTCTCGAATCGCGACGGGTATCTCTTGGAGCTCACTGGGTGGACTCAAGGGAGTCAAGCCTCCTGAGGCGTTTGGAGAGAGGTCGCGAGACTGGTCTCTAGGCCATGCAGGAGACGAAGGCCCTCATCTCTCGATGACGGGGGAATCTCGGGGTTGTTCTCGAGCGGCGGCCCCAGGGTGCGGTTTCTCACGAGGTACGACGGCGAGGTCAGTGAGCCTCTCGTGGGGCGCCAGGGACGTCGGGTCTCCATGCGAGTGGCGAGGGGGAGCGCGTCATTGCTCCCGAGCCATGGTAGGGGAATCTGGCCTCGAGACGTGTTGAAGAAGGTCTCTCGAGGTCGTTCTCGGGTTGAGGCAGGAAACCCTGGGTTCCCTCGACTTGTGCAGGTGACCTCAGGGGGCTTCTCAGGGTGGCTCTGAGAAGCCAGGGAAACTGGAGGTGGGAGGGACTGTCGGGACCCCACTGGGTTTGGTGCATTGGAAGAGGGCCTCATCTCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTGGAAAGTAAAATGACAGCTTTTGATAATAGAAATGTTTATTTTGAAACCAGTAAACACAAAACGTGTTAATAATAGGAGCAAAAATTTGTAAAGTCTTTAATATTATGGTAGACTTTGATTTAAGTGCTTTACATGTAGTAACTCATTTCAAAACAGGCCCATTTTACAGATGTTCAGCTCAGTTCAGTCGCTCAGTCGTGTCCGACTCTTTGCGACTCCGTGAATCGTAGCACACCAGGCCTCCCTGTCCATCACCAACTCCCGGAGTTCACTCAGACTCACGTCCATCGAGTCAGTGATGCCATCCAGCCATCTCTTCCTCTGTCGTCCCCTTCTCCTCCTGCCCCTAATCCCTTCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTAGCATGAGGTGGCCAAAGTACTGGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAAATCCCAGGGCTGATCTCCTTCAGAATGGACTGGTTGGATGGGACTCACAAGAGTCTTCTTCAACACCACAGTTCAAAAGCATCAATTCTTCGGCACTCAGCTTTCTTCACAGTCCAACTCTCACATCTATACATGACCACTGGAAGAACCACAGCCTTGACTAGACAGACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTCAACATGCTATCTATGTTGGTCATAATTTTCCTTCCAAGGAGTAAGTGTCTTCTAATTTCATGGCTGCAATCACCATCTGCAGTGATTTTGGTGCCCCAAAAATAAAGTCTGACACTGTTTACACTGTTTCCCCATCTATTTCCCATGAAGTGATGGGACCAGATGCCATGATCTTCGTTTTCTGAATGTTGAACTTTAAGCCAACTTTTTCACTCTCCTCTTTCACTTTCATCAAGAGGCTTTTTAGTTCCTCTTCACTTTCTGCCATAAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCTCTCGGCAGTCTTGATTCCAGCTTGTGCTTCTTCCAGCCCAGCGTTTCTCATGATGTACTCTGCATATAAGTTAAATAAGCAGAGTGACAATATACAGCCTTGACGTACTCCTTTTCCTATTTGGAACCAGTCTGTTGTTCCATGTCCAGTTCTAACTGTTGCTTCCTGACCTGTATATAGGTTTCTCAAGAGGCAGGTCAGGTGGTCTGGTATTCCCATCTCTTTCAGAATTTTCTACAGTTTATTGTGATCCACACAGCCAGAGGACACAGCATCTAGAAAGGTTGATTAATTTAACCAAACTTAGAAATCAGGAGGTTTAAGTATATATATTTTACAATTTAAATGACTACAATCAATTTAACTTCCTTCAAATTCTTTCTGTGTTCCCAG
Seq C2 exon
ATATGATTCTATAACAGACTCTTCCAGAAATGATATGAAGAGGAAATTTGCACTGACAATGGAATTTGTTGAAGAATACTTGAAAGAAGTTGTAAATCAGCCTTTTCCTTTTGGAGATAAAGAAAAAAACAAACTGACATTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002313:ENSBTAT00000002982:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]