DreINT0083691 @ danRer10
Intron Retention
Gene
ENSDARG00000011909 | itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:ZFIN;Acc:ZDB-GENE-050419-192]
Coordinates
chr18:16016839-16017333:+
Coord C1 exon
chr18:16016839-16017090
Coord A exon
chr18:16017091-16017185
Coord C2 exon
chr18:16017186-16017333
Length
95 bp
Sequences
Splice sites
5' ss Seq
CGAGTAAGA
5' ss Score
6.87
3' ss Seq
AATGTCCATTTGGTGCTCAGGTA
3' ss Score
6.86
Exon sequences
Seq C1 exon
GTGTCAACTCAATCTCTTTGCTAAAATGTGCCTGGACCGGCAGTATCTGGCCATCAATCAGATTTCCATTCCGCTACCAGTAGATCTAATCCTGCGATGCATGTTTGATGACTGCCTGCCTTACAACCTGCGTGCCTCTTTTTGTCGTCTAATGCTGCACATGCACGTGGACCGTGACCCGCAGGAGGCCGTGGTGCCTGTTCGTTATGCACGTCTCTGGACCGAAATACCCTCCAAGATCTCTGTCAACGA
Seq A exon
GTAAGACAAACTCTCTTTGCCAGTTTTACTTTTGAATGTATTTGTCAAACTGAATTGTGTTGTTTGGCTTGACTAAATGTCCATTTGGTGCTCAG
Seq C2 exon
GTATGACTATGAGTTCAGAGACACGTCCAGAGAGGAGATGAAGAGAAAGTTTGCACCTACTATGCATTTTGTAGACGAATATCTCAAAGATGTGGTCAGTCAGCCTGATCCATTTGGAGACAGAGAGAAGAATGAACTGACCCTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011909:ENSDART00000061134:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTACAACCTGCGTGCCTCTT
R:
CCTCTCTGGACGTGTCTCTGA
Band lengths:
168-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]