RnoINT0076690 @ rn6
Intron Retention
Gene
ENSRNOG00000001804 | Itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:RGD Symbol;Acc:69649]
Coordinates
chr4:180670029-180671624:-
Coord C1 exon
chr4:180671373-180671624
Coord A exon
chr4:180670174-180671372
Coord C2 exon
chr4:180670029-180670173
Length
1199 bp
Sequences
Splice sites
5' ss Seq
TGAGTACGT
5' ss Score
4.8
3' ss Seq
TCTTCTATCTGTCTGGGCAGGTA
3' ss Score
10.6
Exon sequences
Seq C1 exon
GTACCAGCTAAACCTCTTTGCAAGGATGTGCTTGGACCGCCAGTACCTGGCCATCAACCAGATTTCAACACAGCTGTCTGTAGACCTGATCCTGCGGTGCGTGTCTGACGAGAGCCTGCCCTTTGACCTCCGAGCCTCTTTCTGCCGACTCATGCTCCACATGCACGTGGACCGGGACCCCCAGGAGTCTGTGGTGCCTGTCCGCTACGCCCGGCTCTGGACTGAGATCCCCACCAAGATCACGATCCATGA
Seq A exon
GTACGTTTGGAAACCTCGTATCTTACTTAGGGGTTTCCATTTTGGTGACGAAACACCACAGCCAAAGTAACTTGGGGAGGAGAGGGTTGATTTGGCTTATAGTTCCACATCACTGTTTATCGTTGAAGGAAGTCAGGGCAGGAACTCAAGCAGGGCAGGAACCTGGAGGCAGGAGCTGAGGCAGAGGCCATAGTGGGGGTACTGCTCACTGGTTAGCTCCCCATGGTTTGGTCAACCTTCTTTCTTATAGAACTCAGGACCGCCAGCCTAGGGGTGGTACCCCCCACAGTGGGCTGGGACCTTCCTCATCAATGACTGAGAAAATGCCTACAGTCTTCCCTACACTCTGATCTTAGGGAGGTAGTTTCTCAGTCAAGGCTGCCTCCTCTCCAGTCGACAGACAAATGTCGGTGTATTGTATTTATTGCTTTTTTCCCCCATTGTTCTGCCATTTAAGTAGCTGAGGAGAAATACTTTAATGAAGGGAGGGTTATTTTGGCCCACAGTTCAAAGGACGGTCCATCTTGGCAAGGAAGACTCAGCCCTAGGACCTTGAGGCAGTGCCACCTTGAATCCACACGCAGGAAACAGAGGGAGCTCAATTCTCATTTTTCCTCTCTATTCGGTAATGGCCTCCAGCCCAGGGTATGGCGCTTTCAACACTCAAAGCGGGCCTTCCCTTTCCAGTTAACTGGTTCTATAAATATCCACAAGACGTGCCCAGCGGTGTGTTTTCTAGAGGATTCTAGATCCCATCCAATTGACCGTGACGATGAGGTGTCACGGGAGACGTTTCTCAGGATGTTCAAATTCAGCAGACGAACGCAAAGCGAGGTGTTTTCAACTTTGGGATGAGAAGCGCAGGAAGGCATTTGCACATTTATGTTCTCACTGTCGATCTGGGAGGAGTCAATAGGACACTCCCTCCCAAGAGCATATGCCAGCTTTCTAGCAGGAAGCATGGTTCTGGAAGCTAGCGAACAACTAGTAACAGCCACAGGTTGCTGAGCGCCTGGTGCGCTGGCGGACCCCACCTGGCTCCGCCCATCTCAGTTCACAGTAGCCCCTGATGAGCAGGTGGGATGCTCACTCCAAGAGGTTGATTGACGTGTCCAAGGCAGTGCCCCCTGGCGGTCAGACTGTGTAACAGTCCCACTTTTCAGTCTTTCAGTCTAACTCTCTTCTATCTGTCTGGGCAG
Seq C2 exon
GTATGACTCCATCACAGACTCTTCCAGAAATGACATGAAGAGGAAGTTTGCCCTGACAATGGAATTTGTCGAAGAATATTTGAAAGAAGTTGTGAATCAACCGTTTCCTTTTGGAGACAAAGAGAAAAATAAACTGACATTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001804:ENSRNOT00000040645:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAAGGATGTGCTTGGACC
R:
TGTCTCCAAAAGGAAACGGTTGA
Band lengths:
354-1553
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]