HsaINT0083247 @ hg19
Intron Retention
Gene
ENSG00000123104 | ITPR2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:HGNC Symbol;Acc:6181]
Coordinates
chr12:26808641-26809481:-
Coord C1 exon
chr12:26809230-26809481
Coord A exon
chr12:26808786-26809229
Coord C2 exon
chr12:26808641-26808785
Length
444 bp
Sequences
Splice sites
5' ss Seq
TGAGTATGT
5' ss Score
4.43
3' ss Seq
TCTTCTTTCTCTATTTCCAGATA
3' ss Score
11.79
Exon sequences
Seq C1 exon
GTACCAGCTAAACCTCTTTGCAAGGATGTGCTTGGATCGCCAGTATCTGGCCATAAACCAGATTTCTACACAGCTGTCTGTAGACCTGATCCTGCGGTGTGTGTCGGATGAGAGCCTGCCGTTCGACCTCCGAGCGTCCTTCTGTCGCCTCATGCTCCACATGCACGTTGACCGGGATCCCCAGGAGTCCGTGGTGCCTGTTCGCTATGCCAGGCTCTGGACAGAAATCCCCACAAAGATCACAATTCATGA
Seq A exon
GTATGTTTGGAAAAAGGTCTTGAGGCTTTGGAATTCATCAGATGAACTCCACGTCAAATGTCTACAGTTTTGAAATGAAACATGTGGAAAGGCATTTGTGTATCCTGTCTTGGGTTGTTAATCTTCTAAATGCAAATAAGATACTCGTTTTGAAGGGTGAAATGATAACTCTCAGTGGTAATAAAGGCACTTTCTAGAAAACAGTAAATAATATTGATGTAATGAGCAAGAATTGTAAGTACTTAATATTGTGGTAGACTGATATAACTGCTTTACACGTGCTAACTCATTTCACAATAGCCCCATTTTACAGATGAGGACCCAGCCTCTAGGAAAGCTAACTAATTTATCCAAGATTATGCACCCAGGAAACTACGTGTGTTTTCCTATTTTTAAATGATTGCAATCAGTTTAACTTGCGTTATCTTCTTTCTCTATTTCCAG
Seq C2 exon
ATATGATTCTATAACAGACTCTTCCAGAAATGATATGAAGAGGAAATTTGCCCTGACAATGGAATTTGTTGAAGAATATTTGAAAGAAGTTGTAAACCAGCCCTTTCCTTTTGGGGATAAAGAAAAAAATAAACTGACATTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123104-ITPR2:NM_002223:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGGATGTGCTTGGATCG
R:
CCCAAAAGGAAAGGGCTGGTT
Band lengths:
349-793
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)