MmuINT0084488 @ mm9
Intron Retention
Gene
ENSMUSG00000030287 | Itpr2
Description
inositol 1,4,5-triphosphate receptor 2 [Source:MGI Symbol;Acc:MGI:99418]
Coordinates
chr6:146321616-146323137:-
Coord C1 exon
chr6:146322886-146323137
Coord A exon
chr6:146321761-146322885
Coord C2 exon
chr6:146321616-146321760
Length
1125 bp
Sequences
Splice sites
5' ss Seq
TGAGTATGT
5' ss Score
4.43
3' ss Seq
TCTTGTGTCTGTCTGGCCAGGTA
3' ss Score
9.18
Exon sequences
Seq C1 exon
GTACCAGCTAAACCTCTTTGCAAGGATGTGCTTGGACCGCCAGTATCTGGCCATCAACCAGATTTCAACACAGTTGTCCGTAGACCTGATCCTGCGGTGTGTGTCTGACGAGAGTCTGCCCTTTGACCTCAGAGCATCTTTCTGCCGACTCATGCTCCACATGCACGTTGACCGCGACCCCCAGGAGTCTGTAGTGCCTGTTCGCTATGCCCGCCTCTGGACCGAAATCCCCACAAAGATCACGATTCATGA
Seq A exon
GTATGTTTGGAAACCCCATCTCTTAGAGTTTCCATTTCTATGATGAAACATGGCCAAAGTAACTTGGGGAGGAGAGAGTTGATTCTTCCACATCACTGTTTATCCTTGAAGGAAGTCAGGTCAGAAACTCAAACAGGGCAGGAACCTGGAGGCAGGAGCTGAGGCACAGGCCATGGAAGGGTGCTGCTTACTGACTTGCTCCCCATGGCTTGTTCAACCTGCTTTTTTATAGCACCCAGGACCACCAGCATAGGGGTGGGGCCACCCATAATGGGCGGGGACCTCCCCATCAATGACTAAGAAAATGCCCTACAGTCTTCCTGAGACCCTGATCTTAGGGAGGTAATTTCTCAATTGAGGATCCCCCCTCTCCAGTTGACATAAAACTATACAGTACATCATATTCATTGCTGTTCATTGCTCTGACAGCAATGAGGAGAAATACTTTAATGAGGGAAGGGTTTATTTTGACTCAGAGTTCGAAGGCTCAGCCCCAGGATCTTAAGGCAGTGCCACCTTAATCTGCACACAGGAGGCAGAGGGAGCTCATGTTTCATTTTTCCTTTTTATTTGCTGATGGCCTCCTGTGCAGGGAATGGTGCTTTCTACACTCAAAGCAGGCCTTCCCTTTTCAGTTAATCGGTTCTGGAGACATTCTCTAGTTGTGCCCGTGGTGTGTTTTCTAGAGGATTCTAGAGCCCATCAAACTGACCATGAAGATAAGGTGTCACAGAGATGTTCAAATTCAGCAGACAAATGCAAGGTGAAGTGTCTTTGACTTTGGAATAAGAAGCATAGGACATAGCACATTTATGTTCTCACTGTCAACCTGGGATGCCCCCTGGCCAGGGCAAATGCCAGCTCTCTAGCAGGAAGCATGGTTCTGGAAGCTAGTGACTACTAATTGTAACAGCCACAGCCTGCAGAGTGCATGGTATGCTGGCAGACCCCACCTGGCTTGACCCATCTCAATTTGCAGTAGCCCGTGGTGAGCAGACAGGATGCTCACCCCAAGAGGTTGATTGACGTGTCCAAGGCAGTGCACTCTAGGAGTCAGACTGTGTAACAGTCCCACTTCTCAGTCTTCCTCATCAATTTAACTTGCTCTTGTGTCTGTCTGGCCAG
Seq C2 exon
GTATGACTCCATTACAGACTCTTCCAGAAATGACATGAAGAGGAAGTTTGCCCTGACGATGGAATTTGTCGAAGAATATTTGAAAGAAGTTGTAAATCAACCATTTCCTTTTGGAGACAAAGAGAAAAATAAACTGACATTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030287-Itpr2:NM_019923:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAAGGATGTGCTTGGACC
R:
TGTCTCCAAAAGGAAATGGTTGA
Band lengths:
354-1479
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: