DreINT0083574 @ danRer10
Intron Retention
Gene
ENSDARG00000014655 | itpr1a
Description
inositol 1,4,5-trisphosphate receptor, type 1a [Source:ZFIN;Acc:ZDB-GENE-070604-3]
Coordinates
chr6:39954914-39955390:+
Coord C1 exon
chr6:39954914-39955165
Coord A exon
chr6:39955166-39955248
Coord C2 exon
chr6:39955249-39955390
Length
83 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
GTTTGCTGTTTCTTGAGCAGTTA
3' ss Score
6.03
Exon sequences
Seq C1 exon
ATATCAGCTGAATTTGTTTGCTCGGATGTGTCTGGATCGACAGTATCTTGCGATTAACAAGATATCAGCACAGCTGGATGTGGATCTGATTCTGCGCTGCATGTCAGATGAAGATTTGCCCTTTGACCTCAGAGCATCGTTCTGCCGCATGATGCTGCACATGCATGTAGACCGTGACCCTCAGGAGCAGGTCACCCCGGTCAAATATGCTCGACTGTGGTCTGAAATCCCATCACAAATTTCCATTGATGA
Seq A exon
GTGAGTGCGTTATTGCTGTGAAATAACACAACGTTAATGAGTGATCTGTTCATTAGCCCGTCTGTTTGCTGTTTCTTGAGCAG
Seq C2 exon
TTATGATAATGATGGGACGTCAAGTGATGAAGTGAAAGAGCGCTTCTCTCAGACGATGGAGTTTGTGGAGAATTACCTGAGGGATGTTGTCTGCCAGAGTTTCCCGTTCTCTGATAAGGAGAAAAACAAACTCACTTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014655:ENSDART00000149019:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.083
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCGGTCAAATATGCTCGAC
R:
GAGAACGGGAAACTCTGGCAG
Band lengths:
169-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]