HsaINT0083193 @ hg19
Intron Retention
Gene
ENSG00000150995 | ITPR1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:HGNC Symbol;Acc:6180]
Coordinates
chr3:4714820-4716027:+
Coord C1 exon
chr3:4714820-4715071
Coord A exon
chr3:4715072-4715885
Coord C2 exon
chr3:4715886-4716027
Length
814 bp
Sequences
Splice sites
5' ss Seq
CGAGTGAGC
5' ss Score
5.16
3' ss Seq
TCTTTCTCCTTTCTTTTCAGCTA
3' ss Score
11.64
Exon sequences
Seq C1 exon
ATATCAGCTGAACCTCTTTGCGAGGATGTGTCTGGACCGCCAATACCTGGCCATCAACGAAATCTCAGGCCAGCTGGATGTCGATCTCATTCTCCGCTGCATGTCTGACGAGAACCTGCCCTATGACCTCAGGGCGTCCTTCTGCCGCCTCATGCTTCACATGCATGTGGACCGAGATCCCCAGGAACAAGTCACCCCCGTGAAATATGCCCGCCTCTGGTCGGAGATTCCCTCGGAGATCGCCATTGACGA
Seq A exon
GTGAGCCTGGCACCTGAAAACCTCACTTTACATTATTCTGTGCGGCAGTAGATAGCCCCATATGGTCTCATTAAATCTTAGAAGAAAGATGAAGTGTTGGTTTTTTCTTCAAGCTTAAAATAAAATTAAGTGGATGGCAAATATTTTTTTCCTCAAGAATGTGAAAGATGGCATGATTATGTTTTTGGTTTTTGTTTGTTTGTTTGTTTGTTTGAGATGGAGTCTCACTCTGTTGCCCAGGCTGAACTGCAGTGGCGCAATCTCGGCTCACTACAAGCTCTGCCTCCCGGGTTCGTGCCATTCTCCTTCCTCAGCCTCCCAAGTAGCTGGGACTACAGACGCCCACCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGGGACGGGGTTTCACCGTGTTAGCTAGGACGGTCTCGATCTCCTGACCTTGTGAGCCGTCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCTGGCCCCGATTGTATTTTTTATATCTCATTTATCTCCTCTTTCATTCTGCAAATATTTAAGTGTGTACTATGTGCCAAGCTCAAGAAATATATCAGTGAACAAACTAGAAAGCAATCTCTATGCTAGTTGGTGGAAGACAGACAATAGGCAAGATAAACGACTCAAATATATAGTTGGTGATATATGCTAAGGAGGGAAAAAATAAAGTAGGGTCAAGGGATGCCAAGGGTTAGGGGATGTTGACTTTTGAAGCTGAGTGACCCAGGAAGACCTCTCTGGGAATAACTTGAAATTTTGTTTCCTTTCTTTCTCCTTTCTTTTCAG
Seq C2 exon
CTATGATAGTAGTGGAGCTTCCAAAGATGAAATTAAGGAGAGATTTGCTCAGACCATGGAGTTTGTGGAGGAGTATTTAAGAGATGTGGTTTGTCAGAGGTTCCCTTTCTCTGATAAAGAGAAGAATAAGCTTACGTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150995-ITPR1:NM_002222:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCTGAACCTCTTTGCGAG
R:
GGAACCTCTGACAAACCACATCT
Band lengths:
353-1167
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)