MmuINT0084429 @ mm10
Intron Retention
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108386620-108387505:+
Coord C1 exon
chr6:108386620-108386871
Coord A exon
chr6:108386872-108387363
Coord C2 exon
chr6:108387364-108387505
Length
492 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
3' ss Seq
ACCCTGTCTCGTCCTCTCAGCTA
3' ss Score
9.66
Exon sequences
Seq C1 exon
ATATCAGCTGAACCTCTTTGCAAGGATGTGTCTGGACCGCCAGTACCTGGCCATCAATGAAATCTCCGGGCAGCTGGATGTTGATCTCATTCTCCGCTGCATGTCTGACGAGAACCTCCCCTACGACCTCAGGGCATCCTTTTGCCGCCTCATGCTTCACATGCATGTGGACCGAGATCCCCAAGAGCAGGTGACACCTGTGAAATATGCCCGACTGTGGTCAGAAATTCCCTCTGAGATCGCCATTGATGA
Seq A exon
GTAAGTCTGGGTCCAACTCCCTGAAGAGCTCTTATGTCACTTCAAAACCCCATGATTCTAATGTTCTGTGCAGCCGCAGAGAAGCCACATAGGTGACCTAGTGAAATCATAAGAGAAGGAAGAACTTTTGTTTCCTTCAGTATTTAAATAGAATTGTGTAGCTAGCAAATAGTGTTTAATTCCTCAAGAAAACAGGATGCCAGGGTGCAGTTTTGCTACCTCTGGTTTATCTCTTTCCTTTTGCAAATATCTAAATTTGTACTATGTCCCAAGACTGGGGAATATTAGTGAAGAATCTAGAAAACTACCTCTATTATACCGGAGGAAAGACAGGCAGTAAACATGATGAGGTAGATTTGTAAGTGTACATGCTAAGGAAGGAAGCAGAAGTCTGGTCCAGGTTAGGGGATGCGGTCTTTGCAGGCTAAGCAGCCTAAGAAGGCCTGGATGCAAAGAGCTTGACAGTCCCTCCACCCTGTCTCGTCCTCTCAG
Seq C2 exon
CTATGACAGCAGTGGAACATCCAAAGATGAAATTAAGGAGAGGTTTGCACAGACGATGGAGTTTGTGGAGGAGTACCTAAGAGATGTGGTTTGTCAAAGATTCCCCTTCTCTGATAAGGAGAAAAATAAGCTCACGTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102:ENSMUST00000032192:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAAGGATGTGTCTGGACC
R:
AGGGGAATCTTTGACAAACCACA
Band lengths:
342-834
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types