BtaINT0078453 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21790134-21791170:-
Coord C1 exon
chr22:21790919-21791170
Coord A exon
chr22:21790276-21790918
Coord C2 exon
chr22:21790134-21790275
Length
643 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGC
5' ss Score
3.38
3' ss Seq
TCTTTCTCCTTTCCTTTTAGCTA
3' ss Score
11.07
Exon sequences
Seq C1 exon
GTACCAGCTGAACCTCTTTGCGAGGATGTGCCTGGACCGCCAGTACCTTGCCATCAACGAGATCTCGGGCCAACTGGACGTGGATCTCATTCTCCGCTGCATGTCCGACGAGAACCTGCCCTACGACCTGCGGGCATCCTTCTGCCGTCTCATGCTCCACATGCACGTGGACCGAGACCCCCAGGAGCAGGTCACCCCCGTGAAATACGCCCGCCTCTGGTCTGAGATCCCCTCCGAGATCGCCATTGATGA
Seq A exon
GTGAGCCTGGCTCCTTCGCCCTGTTAAGACCTTGTGTTGCTTTCAAATCTCTTAGCTGCAGTGTTCTGTGTAGCAGAAGACAAAGGACTTATGGTCAGGTTAAGTCTAGTTCAATCAGAGAAGAAAGGCTTTTTTTTTTTAAATGAAAATATAATTAAGCGTAGCAAGCATTATTTGTTCCTTCAAGAAGGTAAAAGATGGTATGATTGCCCTTTTATACCTTGTTTGTCTGTTTTATTCAGCAAATACTTAAGTGTCTCCTGCCTGCCAGGCTTAAAGAATCTATCTGGGAACAAACAAGAAAACTATTTTGGACTTAGTGGTTCGATGGTTAAGCCTCTGCACTTCCAACGCTGGGGGCACGAGTTTAATTCCTGGTCGGGCAACTAGGATCCCACATGCTGTGTGATGTGGCCAAAAAAGAAAACTATGTTTACACTAGTGGGGAAAGACAGGCAATAACTAAGATAAAAGACTAAATATATACGTTAGTGGTGGCTGCTGAGCAGGGAAAGTAAATAGGGGCAAGAGGGTGGAAAGTGTTGGGATGGGTGGTTCTGGCTCTAGGGGCTAAGCAAACAGGGAAGGCCTCCCTGGGAGGAACCTGACCTTTGATTGCCTTTTCTTTCTCCTTTCCTTTTAG
Seq C2 exon
CTACGATAGTAGTGGAACCTCCAAAGATGAAATTAAGGAGAGGTTCGCTCAGACCATGGAATTTGTGGAGGAATATTTAAGAGATGTGGTGTGTCAGAGGTTCCCTTTCTCTGATAAGGAGAAAAATAAGCTTACATTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455:ENSBTAT00000054653:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCAGCTGAACCTCTTTGCG
R:
GGAACCTCTGACACACCACAT
Band lengths:
355-998
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]