GgaINT0021958 @ galGal3
Intron Retention
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19085709-19087445:+
Coord C1 exon
chr12:19085709-19085960
Coord A exon
chr12:19085961-19087303
Coord C2 exon
chr12:19087304-19087445
Length
1343 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
3' ss Seq
CTGTTTGTTTTCCCCTTCAGCTA
3' ss Score
11.09
Exon sequences
Seq C1 exon
ATACCAGCTGAACCTCTTTGCCAGAATGTGCCTTGATCGGCAGTACTTGGCCATAAACGAGATTTCTGGCCAGCTGGACGTGGATCTCATTCTCCGCTGCATGTCTGATGAAAACTTGCCGTATGACCTGAGAGCGTCGTTCTGCCGGCTCATGCTGCACATGCACGTTGATCGTGACCCCCAGGAGCAGGTCACACCAGTGAAGTATGCACGGCTGTGGTCTGAGATACCTTCTGAAATCGCGATTGATGA
Seq A exon
GTAAGTGCTTGCTGGAATGGTGTGGGAAAGGAAATCCCATCGCTTGATTATTATTATTACTGTTTTTAAATGAAACCAGATCAATCCGAATGGTTTTTTTTAATACTGTTTGGTATTGGTTTTTGTGTTTTTTAGCCTATTCTCACTAGTTCTGTTATTGAAGCCATGCAGTAGAAGATTCGTTGCTTGTAATGTTTGGAGAGGATCTTCCTCAGTAAAAAAAAAAAATGAAATAAAAACACCACCTTCCTGTCTGTGTGGTATAAGGTCTGAAAGCAGGGTGGTATTTCTGCAGAATACTGTGGTGTCTGCCTCGATGGGGGTGATGCGATCAGTGACCCTGGGGAGGGGGAGCAAGGGGGGGAGGGCTGTTTCCTTCTTGCCTTGTTTGATCAGAGCAGCGACTCTTCAAAGCTGATCGTCCATACAGCAGCCAGTGCCATCAATAGCAGAAACAAGGGGAAGATGCAGAAACAAGTCATGTGCTGGATACAGTCATGTTGCTTAATTGCCAATGGAAAGTATTCTGATACAGGGGTAGAAAACCAAAAGAAAATCACAGCTTGACTGGAAACTTGATTTCTTGATTGCAGACCCGTATTGCCTCTTTATAGTAGAAATAATTTAACAACAGGTGAACAGAATTGAACAAATCAAAACTCAGTTTCTTCAGTCAGAGGAAATGGGCAATGGCAATCATGTCAACCATTAGGAATTTGGTTCTTTTTAGTATTAGTACTCATGTTCAGTGTTTTTCTTCCTTCCTCCCCTCCTCACTAACCCAGTCTTTTATGAGAAAATGCAATATCTTGTAGTCAACCTTAAATGCCAAAATAGAGTAGTGATTAGCTTAAGCTAAACAATGAGTGATGCATGATCAGAAAGGAAGGAGTGCAGAAGGTAGTTAATGGAAGTTTATGGGGATTCTCTTTTGAAAGTTCTCTGCACAGACTGAGAAACAACATTTCTGTTACAGGAAAAAAATCAAGTCTACATTGAATGCATATTGTTTTTATTTGGAGAGAAGTTAGCATCCACAGTCAGCATCTCTTGGCCACAACTGCTCTCCTGAGTGCTGCACACAGCTTGTCAGTTTGCAGTAAAAAAAAAAACAAACAACTTTATTGGGACAAAACTGTTTTGTTTTGTTTTTCTTGGATACTATTAAGTAGTGCAGAGTGACCCTGTGGGATAAAGCAGCAAAAGCCAGGAAAGTCTGGTGTCAGCTTCCTGACTGTCCCTGGGACAGACAAACTGTTCAAGAGCCTTTAGCTTTTCCTGGGGGATCGAGCCCTGTGCACATAACTGCTAAATTCTGTTTTTCTGTTTGTTTTCCCCTTCAG
Seq C2 exon
CTATGATAGCAGCGGAACTTCCAAAGATGAAATTAAAGAGAGATTTGCGCAAACGATGGAGTTTGTAGAGGAGTATTTAAGAGATGTGGTGTGTCAGAGATTCCCTTTCTCTGATAAAGAGAAGAATAAGCTCACTTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294:ENSGALT00000013505:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTTTGCCAGAATGTGCCT
R:
AGGGAATCTCTGACACACCACA
Band lengths:
346-1689
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]