RnoINT0076634 @ rn6
Intron Retention
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140419812-140420743:+
Coord C1 exon
chr4:140419812-140420063
Coord A exon
chr4:140420064-140420601
Coord C2 exon
chr4:140420602-140420743
Length
538 bp
Sequences
Splice sites
5' ss Seq
CGAGTAAGC
5' ss Score
6.91
3' ss Seq
CTTCTCTCCCTCCCTCTCAGCTA
3' ss Score
9.3
Exon sequences
Seq C1 exon
GTATCAGCTGAACCTCTTTGCAAGGATGTGTCTGGACCGCCAGTACCTGGCCATCAATGAAATATCCGGGCAGCTGGATGTTGACCTCATCCTCCGCTGCATGTCCGATGAGAACCTCCCCTATGACCTCAGAGCATCCTTTTGCCGCCTCATGCTTCACATGCATGTGGACCGAGATCCCCAGGAGCAGGTGACCCCTGTGAAATACGCCCGTCTGTGGTCAGAAATTCCCTCCGAGATCGCCATTGACGA
Seq A exon
GTAAGCGTGGGTCCTGCTCCCTGAAGAGCTCTCACGTCACTTCAAAACCCCATAATTCTAATCTGTGCAGCCTCAGAGAAGACACATAGGTGACCTCAGGAAATCCTAAGAGAAAGAACTTTTTCCTTCAGAATTTAAATAGAATTGTGTGGCTACCAAGTATTATTTAATTCCTTAGGGACATGGGGTGCTGGGGTGCATCTTGCTATCTCTTGTTTATCCCCTTCCTTTTGCAAATGTCTAAATTTGTATGGTGTCCCAAGATTGGCAAATATTAGTGATAATCTAGAAAACTACCTCTACTGTAGTGGGGACAGACAGTAAACATGATGAGGGGCTAAAGTAGCTTTGTAAGTGTGCACGCTAAGGAAGGAAGCAGAAGTCTGCTCCAGGTTAGGGGATGCTGTCTTTGAAGGCTAAGCAGCCCAAAATGGCCTGGCTGGGAGGAGCTTGATGGTTCCCTTTTCTCTGTCCTCCCTCTCCCTGTCTCCCCCTCCTCCCCGCTCCTTCCCCCTCCCCTTCTCTCCCTCCCTCTCAG
Seq C2 exon
CTATGACAGCAGTGGAGCATCGAAGGATGAAATCAAGGAGAGGTTTGCTCAGACGATGGAGTTTGTGGAGGAGTACCTGAGAGATGTGGTTTGTCAAAGATTCCCCTTTTCTGATAAGGAGAAAAATAAGCTCACATTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104:ENSRNOT00000040255:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAAGGATGTGTCTGGACC
R:
AGGGGAATCTTTGACAAACCACA
Band lengths:
342-880
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]