GgaINT0122238 @ galGal3
Intron Retention
Gene
ENSGALG00000014071 | ITPR2
Description
NA
Coordinates
chr1:69994192-69996045:-
Coord C1 exon
chr1:69995794-69996045
Coord A exon
chr1:69994337-69995793
Coord C2 exon
chr1:69994192-69994336
Length
1457 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
TTCTGTGTCTTGCATTGTAGGTA
3' ss Score
10.87
Exon sequences
Seq C1 exon
GTACCAACTGAACCTCTTTGCAAGAATGTGCCTGGACCGCCAGTATCTAGCCATCAACCAGATTTCTGCACAGCTATCAGTAGACTTGATCCTGCGATGCATGTCTGATGAAAGCCTACCTTATGACCTCCGGGCTTCTTTTTGCCGGTTGATGCTACACATGCACGTGGACAGAGATCCTCAGGAGTCAGTGGTACCTGTCAGATACGCCAGATTGTGGACTGAAATTCCTACCAAGATCACAATTCATGA
Seq A exon
GTGAGTTGAAACGTTGCAGAATACGGTACAAAATTATTTTACTGGGGTTAATCTTAGAACAAAATGGTTGTAGCTGCCTAATGTCAACACATGCATGTAAAAAGATATTTAGATGCAGAACGATGAACAATTAGTTGTTATTAATCTCGGAAACTTCCTTGGGTAGCTTTACTTGGACATATAATCACAGAATCATGCAGGTTGGAAATGATCTTCAGGATACGGACTGAAGGTCCAACCATCAACCTGACCTACTGAGTCCCATCACTAAATCATGGCCCTTAGTGCTGCATCTTCCATTTTACTTCACTTCATTACTCACTTTATTTCTCATATACAGAGCAAACAGGATAAAATGGAATGGCCTTTCCTCAGAACAACAGAATTTGAAGTAATCAAGTTGTGCCTAACATCAGGCGTGTACCACGTTGGAATTTAAACTTCTTCCTCAACTGGAAGTTACACTTGAAAAACCAAAATCGACAGCCAAGTGCAGTTATTGCACCAGAAACAGTTCACTGAAGCTTTGGTCTCCATTCAGCAAAGTACTTAAGCACATGTTAAATTTAAGTGTGGATGAAGGGCCCACTGACTTCAGTGGAAGCCCTCTTTGGCTTAAGTAATTTAATGGAGCAGCACTGCTGGGCTGGACCCAGACATGGAGTACCTGGCTGAGGAGATAAAGAAGATGAAGTGTAGCAATGCAGCAGACAGTATTGCTTCTGCTACTGATATGAGGGAGTGTTTTGACTTAGGATAATAGAGCCTAATTGATGGTGGAAGCTGATTTCCTGGTCTGCTGTCTTACTTGTAGAGATAGTAAAGGAGAACAGAAGGCTAAGAGGAAACCTCATTGCTGTCTTCAACTTCCTGTACAGGAGAGGTGGAGAGGGATTTACTGGTCTCTTCTCCTTGGTAAATGATGATAGCTTCCATGGGAACAGCACCAAACTGTGCCCAAGGAGGTTCAGACTGGTCGTTAGAAAACTTTTATTTATTCTGAGGGTGGTCAAACACTAAAATTGGCTTCATAGAGAGATGGTTGATTACCCATGCCTGTCTGTTCAAGAGGCATTTGGATAATGGCCTTAATAGTACACATTCCCTTTTGGTTAGCCCTGATCAGGCAGCTGCACTTGATGATGTTTCTGTTCCATCCCGTTTTCTGGCTGATGAGAGAGGAAAGCTGGGATTTCATGACTTAGTGAATCAGTCTTAGTGCTATCAGTCAGAACCATAGTATCTTTCTGTCTGTGTTATTCCCATTCATTGCGCCACCTACTGTTGGAGGAGAAGCTTGTGCATCCTCTGTCTGGCATCTTTGCATATCTATGTAGAATTAGTTGACCTCTACCCCTTCTCCTTGCAGAGAACTGATAGTGATTTTAAAGCATTATTGTTGGTTTGTTTATTCTTTAATGCCAGCTGATCCCTTCCTTCTGTGTCTTGCATTGTAG
Seq C2 exon
GTATGACTCTTTCACAGATTCTTCAAGAAATGAAATGAAGAGGAAATTTGCACTAACTATGGAATTTGTGGAAGAGTACTTGAAAGAAGTTGTAAATCAGCCTTTTCCTTTTGGTGACAAAGAGAAAAATAAACTTACATTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014071:ENSGALT00000022784:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAAGAATGTGCCTGGACC
R:
TGTCACCAAAAGGAAAAGGCTGA
Band lengths:
354-1811
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]