BtaINT0079551 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004078 | KCNH2
Description
potassium channel, voltage gated eag related subfamily H, member 2 [Source:HGNC Symbol;Acc:HGNC:6251]
Coordinates
chr4:114327812-114328780:-
Coord C1 exon
chr4:114328681-114328780
Coord A exon
chr4:114328085-114328680
Coord C2 exon
chr4:114327812-114328084
Length
596 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
CCGTTCTCTGTCTCCCACAGACC
3' ss Score
12.82
Exon sequences
Seq C1 exon
ACCAACATGATCCCCGGCTCTCCGGGCAGCGCGGAGTTGGAGGGCGGGTTCAACCGGCAACGCAAACGCAAGCTGTCCTTCCGACGGCGCACGGACAAGG
Seq A exon
GTGAGGCGGGGGAGGGGAGGGGGCGGGGCCCAGGCGAGCCGGAAGGCGGGCGGGGGCGTGGCCCAGAGGGGGGCGGAGCAGAGGGCGGGGCCGGTGGGTCTGCTCCTCCCAGGCCCCACAGACCTTCCGTCCCCTACCATCAGCGTTCCCTTCTCACTCCATCCGTTCAGGCCAACTTGAAATGTCACCTCCTCCAGGAAGCCCTCTTCCACACTCCAGGGCAGGGGCGCGCCTAAGTATATTGGGTCCTCACAGGGCTGGCGTCTTGATGGGCGCTGCTTTGAACCAACGAGGGGAGGAAAGACAGGGCAAAGGAGGGAGAGGTGGCCAGCATGGCAGGGGAGGGCTAGGGCCCGGGGTCCCAGAGAGCCCCGCCCAGCAGTGCTACTGACCCAGCTCGGGCAGCCAGCGGTCACAGCCCATCTGGTCCCGCCCCCGGAGTTCTCAGTCCTCTTGGAAGTGGGTGAGAGCACAAGACAGGATTGGGGACAACCCAGGGCGTCCTGCCCCCGGTCCCCTCCCCTCCCCTTCCGGCCCTCCCCTCCTCTCTGTGCCACCTCCTGCCTTCTCTGAGGCCCGTTCTCTGTCTCCCACAG
Seq C2 exon
ACCCGGAGCAGCCAGGGGAGGTGTCGGCCTTGGGGCCGAGCCGGGCGGGGGCAGGGCCGAGTGGCCGGGGCCGGCAGGGGGGGCCGTGGGGGGAGAGCCTGTCCAGCGGCCCCTCCAGCCCCGAGAGCAGTGAGGATGAGGGCCCAGGCCGCAGCTCCAGCCCCCTCCGCCTGGTGCCCTTCTCCAGCCCCAGGCCCCCCGGAGAGCCGCCGGGTGGGGACCCCCTGACCGAGGATGGCGAGAAGAGCAGCGACACTTGTAACCCACTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004078:ENSBTAT00000005328:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACATGATCCCCGGCTCTC
R:
ACAAGTGTCGCTGCTCTTCTC
Band lengths:
358-954
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]