HsaINT1017141 @ hg38
Intron Retention
Gene
ENSG00000055118 | KCNH2
Description
potassium voltage-gated channel subfamily H member 2 [Source:HGNC Symbol;Acc:HGNC:6251]
Coordinates
chr7:150947606-150948543:-
Coord C1 exon
chr7:150948444-150948543
Coord A exon
chr7:150947879-150948443
Coord C2 exon
chr7:150947606-150947878
Length
565 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
CCATTCTCTGTTTCCCACAGACA
3' ss Score
11.45
Exon sequences
Seq C1 exon
ACCAACATGATCCCGGGCTCCCCCGGCAGTACGGAGTTAGAGGGTGGCTTCAGTCGGCAACGCAAGCGCAAGTTGTCCTTCCGCAGGCGCACGGACAAGG
Seq A exon
GTGAGGCGGGGGAGGGGAGGAAGGGGGAGGGCGGGGACAAGGTGAGGCTGGGAGCTGGAAGGCGGGGTGGGCCGTGTCTGCTTTACCCAGGCCTCAGACCTTCCCATCCCTTCCTCCAGTGTGCCCACTCCACACCCCAGCTGTCCAGATGCTGCCCATCTTTCAGGGCCCCTGCAGCTGTCACCTCCTCCAGGAAGCCCTCTTCCACCCTCCAGGGCAAGCCTAGGCTTTTTGGACTTCACAGGGCTGGGGTCTCTGTGAGCACTGAGGAGGAAAGAACATAGAACAAAGGAGGGCCAGGGAGCCAACGATGGGGCTGAGGCCCCGCAGTCCCAGAGATCCGCCAACCCCTGAAGCACCATTGCCAGTGCTTGGGCAGTCAGGGGGTCCTGGGAGTTCTTGGTCGGCTTGACAGTGGGTGCAAGATAGCAGAAGAAGCGACTGGGGACAAACCAGGGCTTCCTGCCCAGTCCTCTCTCGGGCTCGCTCCTGTCCCCTCCTCCACCCTCGCCCCCTCCTCTCTGTTCTCCTCCCCTCTCTGAGGCCCATTCTCTGTTTCCCACAG
Seq C2 exon
ACACGGAGCAGCCAGGGGAGGTGTCGGCCTTGGGGCCGGGCCGGGCGGGGGCAGGGCCGAGTAGCCGGGGCCGGCCGGGGGGGCCGTGGGGGGAGAGCCCGTCCAGTGGCCCCTCCAGCCCTGAGAGCAGTGAGGATGAGGGCCCAGGCCGCAGCTCCAGCCCCCTCCGCCTGGTGCCCTTCTCCAGCCCCAGGCCCCCCGGAGAGCCGCCGGGTGGGGAGCCCCTGATGGAGGACTGCGAGAAGAGCAGCGACACTTGCAACCCCCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000055118:ENST00000262186:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACGGAGTTAGAGGGTGGCT
R:
GACAGGGGGTTGCAAGTGTC
Band lengths:
343-908
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains