MmuINT0085462 @ mm10
Intron Retention
Gene
ENSMUSG00000038319 | Kcnh2
Description
potassium voltage-gated channel, subfamily H (eag-related), member 2 [Source:MGI Symbol;Acc:MGI:1341722]
Coordinates
chr5:24321946-24322754:-
Coord C1 exon
chr5:24322655-24322754
Coord A exon
chr5:24322222-24322654
Coord C2 exon
chr5:24321946-24322221
Length
433 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
3' ss Seq
ATGCTCTCTGTTTCCCACAGACA
3' ss Score
10.95
Exon sequences
Seq C1 exon
ACCAACATGATTCCTGGCTCCCCAGGCAGTGCAGAACTAGAGAGCGGCTTTAACAGGCAACGCAAGCGCAAACTGTCATTCCGCAGGCGTACAGACAAGG
Seq A exon
GTGAGATGGTCAAGGGGAGGGCAGGAGGAGAGTGGAGGGCAGAGGGGAGTGCGGGCAGGGTCAGGCTGTGCAGGCTCCACCCCTTGCCCAGCGTTCAGGCACGCAGTCCTCCAGTGCACCCCACCCCCATGCCTCCCTTCCACTGGACAAAGGCTGGGCTTTTGGTCTTTATTATGCCTGAGTGTTGTCTAGCGGGCCTTGACCCCTTAAAGAGAGGAGGGAGGTGGCAGGAGGGAGCACAAGAACAAAGGAATAAGCAGAGGGCTACAGAGAGCCAGAGATCTGGAGTCAGAAGTGACCCCCCCCCCCCGGGGTGTGGCAGGGCGCGAGATAAAACAACTTTGTCCGTCCTCACACTCTGCCCCTTGCTCAGCTCCCCTTGCCCGTCCCCTGTTCTCCCCTCTCTCTGAGGTATGCTCTCTGTTTCCCACAG
Seq C2 exon
ACACAGAGCAGCCAGGGGAGGTGTCAGCCCTGGGGCAAGGCCCTGCCCGAGTTGGGCCAGGGCCGAGTTGCCGGGGACAGCCGGGAGGGCCATGGGGGGAGAGCCCATCCAGCGGCCCTTCCAGCCCAGAGAGCAGTGAAGATGAGGGCCCTGGTCGCAGCTCCAGTCCCCTCCGCCTGGTGCCCTTCTCCAGCCCCAGGCCTCCGGGAGACCCCCCAGGTGGGGAGCCTTTGACAGAGGATGGGGAGAAAAGTGACACCTGTAATCCCTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038319:ENSMUST00000036092:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACATGATTCCTGGCTCCCC
R:
CCATCCTCTGTCAAAGGCTCC
Band lengths:
342-775
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types