GgaINT1015902 @ galGal4
Intron Retention
Gene
ENSGALG00000027043 | KCNH2
Description
potassium channel, voltage gated eag related subfamily H, member 2 [Source:HGNC Symbol;Acc:HGNC:6251]
Coordinates
chr2:334320-334773:+
Coord C1 exon
chr2:334320-334419
Coord A exon
chr2:334420-334494
Coord C2 exon
chr2:334495-334773
Length
75 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCCGTGTGTCCTCTCCTCAGATG
3' ss Score
11.99
Exon sequences
Seq C1 exon
ACCAACATGATCCCCGGTTCCCCGGGCAGCGATGAACTGGACAGCGGCTTCAACCGCCTGCGCAAACGCAAGCTCTCCTTCCGCCGCCGCACGGAGAAAG
Seq A exon
GTGAGGGGTTGTGGGGGTGCAGGGGGCGTGGGGGCCCGGAGGGGTGCATGACCCCCCCGTGTGTCCTCTCCTCAG
Seq C2 exon
ATGCGGAGGCCACCGGGGAGCCACGTGGTGGGCAGAAGGCGCTGCGGCTGAGCAGGGGCTGCCAGGCACCGGGAGCCCCACGGGGGCTGGCAGAGTGGGAGCCGTGCCACTGCAGCTCGCCCTCCAGCTCCCCATCCAGCGATGAGGATGAGCACCCCGTGCCCACCCCGGGGGCTGCCGCTCTCTCACCCTTCCGCAGCCCCCGGCCCGGCGGTGAAGCCCCCGCAGCCACCGACACTGAGGAGCGCGAGGGCAGCGATATGTGCAACCCCCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027043:ENSGALT00000045642:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.647 A=NA C2=0.894
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACGCAAGCTCTCCTTCCG
R:
CTGGATGGGGAGCTGGAGG
Band lengths:
176-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]