RnoINT0077724 @ rn6
Intron Retention
Gene
ENSRNOG00000009872 | Kcnh2
Description
potassium voltage-gated channel subfamily H member 2 [Source:RGD Symbol;Acc:621414]
Coordinates
chr4:7384010-7384902:+
Coord C1 exon
chr4:7384010-7384109
Coord A exon
chr4:7384110-7384623
Coord C2 exon
chr4:7384624-7384902
Length
514 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
ATGTTCTCTGTTTCCCACAGACA
3' ss Score
11.77
Exon sequences
Seq C1 exon
ACCAACATGATTCCTGGCTCCCCCAGCAGTGCGGAACTAGAGAGCGGCTTCAACAGGCAGCGAAAGCGCAAACTGTCCTTCCGGAGGCGTACTGACAAGG
Seq A exon
GTGAGGTGGTCAAAGGGAGGGCCGGAGGACAGTGGGGGCAGAGGGCAGAGGGCAGGGTCAGGCTGTTCAGGCTCCACCCCTTGCCAAAGTCTTCCAGTACGGTCCTCCAGGTCAACCCCACGCCTCCCTTCCTCTGTCCAGAGACTGCCACCTTTTCATGCCCCGTTTGAACCACCTTCTCCTTTGAGAAGACCTCCCCTACGTTCAAGGACAAAGGCTGGGTTTTTGGTCTTCATTATGCCTAAGTGTTGTCTAGCAGGCCTGGACCCCTTAAAGAGAGGAGGGAGGTGGCTGGAAGAAGCACAAGAACAAAGGAACAAAGCACAGAGCCATAGAAAGCCAGTGAGCGAGAATCAGCGATGCCCCTGAGGGCGCTGACCAGCGTGGAGGGAGTGGGAGGAAGATAAAACAACTTTACAGACACTCGACCCTGCTCCTTTCCAGGCTTGCTCAGCTCCCGTTGTCCCTTCCCCATTCTCCCCTCTCTCTGAGGTATGTTCTCTGTTTCCCACAG
Seq C2 exon
ACACAGAGCAGCCAGGGGAGGTGTCAGCCCTGGGGCAAGGCCCTGCCCGAGTTGGGCCAGGGCCGAGTTGCCGGGGACAGCCGGGAGGGCCATGGGGGGAGAGCCCATCCAGTGGCCCTTCCAGCCCAGAGAGCAGTGAGGATGAGGGCCCAGGTCGCAGCTCCAGCCCCCTCCGCCTGGTGCCCTTCTCCAGCCCCAGGCCTCCCGGAGACTCCCCAGGTGGGGAGCCTTTGACAGAGGATGGAGAGAAAAGCAGTGACACTTGTAATCCCCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009872:ENSRNOT00000013800:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACATGATTCCTGGCTCCCC
R:
CCATCCTCTGTCAAAGGCTCC
Band lengths:
342-856
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]