MmuINT0085462 @ mm9
Intron Retention
Gene
ENSMUSG00000038319 | Kcnh2
Description
potassium voltage-gated channel, subfamily H (eag-related), member 2 [Source:MGI Symbol;Acc:MGI:1341722]
Coordinates
chr5:23827764-23828572:-
Coord C1 exon
chr5:23828473-23828572
Coord A exon
chr5:23828040-23828472
Coord C2 exon
chr5:23827764-23828039
Length
433 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
3' ss Seq
ATGCTCTCTGTTTCCCACAGACA
3' ss Score
10.95
Exon sequences
Seq C1 exon
ACCAACATGATTCCTGGCTCCCCAGGCAGTGCAGAACTAGAGAGCGGCTTTAACAGGCAACGCAAGCGCAAACTGTCATTCCGCAGGCGTACAGACAAGG
Seq A exon
GTGAGATGGTCAAGGGGAGGGCAGGAGGAGAGTGGAGGGCAGAGGGGAGTGCGGGCAGGGTCAGGCTGTGCAGGCTCCACCCCTTGCCCAGCGTTCAGGCACGCAGTCCTCCAGTGCACCCCACCCCCATGCCTCCCTTCCACTGGACAAAGGCTGGGCTTTTGGTCTTTATTATGCCTGAGTGTTGTCTAGCGGGCCTTGACCCCTTAAAGAGAGGAGGGAGGTGGCAGGAGGGAGCACAAGAACAAAGGAATAAGCAGAGGGCTACAGAGAGCCAGAGATCTGGAGTCAGAAGTGACCCCCCCCCCCCGGGGTGTGGCAGGGCGCGAGATAAAACAACTTTGTCCGTCCTCACACTCTGCCCCTTGCTCAGCTCCCCTTGCCCGTCCCCTGTTCTCCCCTCTCTCTGAGGTATGCTCTCTGTTTCCCACAG
Seq C2 exon
ACACAGAGCAGCCAGGGGAGGTGTCAGCCCTGGGGCAAGGCCCTGCCCGAGTTGGGCCAGGGCCGAGTTGCCGGGGACAGCCGGGAGGGCCATGGGGGGAGAGCCCATCCAGCGGCCCTTCCAGCCCAGAGAGCAGTGAAGATGAGGGCCCTGGTCGCAGCTCCAGTCCCCTCCGCCTGGTGCCCTTCTCCAGCCCCAGGCCTCCGGGAGACCCCCCAGGTGGGGAGCCTTTGACAGAGGATGGGGAGAAAAGTGACACCTGTAATCCCTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038319-Kcnh2:NM_013569:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACATGATTCCTGGCTCCCC
R:
CCATCCTCTGTCAAAGGCTCC
Band lengths:
342-775
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: