BtaINT0080129 @ bosTau6
Intron Retention
Gene
ENSBTAG00000044032 | KDM2A
Description
lysine (K)-specific demethylase 2A [Source:HGNC Symbol;Acc:HGNC:13606]
Coordinates
chr29:45810654-45810929:+
Coord C1 exon
chr29:45810654-45810758
Coord A exon
chr29:45810759-45810845
Coord C2 exon
chr29:45810846-45810929
Length
87 bp
Sequences
Splice sites
5' ss Seq
AGGCTAAGT
5' ss Score
2.18
3' ss Seq
CTCTCCTGTCTCACCCTTAGGTT
3' ss Score
12.11
Exon sequences
Seq C1 exon
TTTGAGTTCTCTTCCATCTTCTGTTTCGCAGCGGGTCTCTATATGAACGGAAAATGTCGAAAGTTGCCAGCCTGCTCTTCCCCTTGGTGCTTAGGGGAACTGAGG
Seq A exon
CTAAGTCTGTCTGGATGCTGTTAGAAGTGGTTGACTCTTTGTTCACTGTGTCTCTTCTTCCCCTCTTCTCTCCTGTCTCACCCTTAG
Seq C2 exon
GTTTTGCTGGAGGAACTTGCCAACAGTGATCCCAAGTTAGCCCTCACTGGAGTCCCTATAGTACAGTGGCCGAAAAGGGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044032:ENSBTAT00000061554:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATCTTCTGTTTCGCAGCG
R:
TCCCTTTTCGGCCACTGTACT
Band lengths:
173-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]