HsaINT0084995 @ hg19
Intron Retention
Gene
ENSG00000173120 | KDM2A
Description
lysine (K)-specific demethylase 2A [Source:HGNC Symbol;Acc:13606]
Coordinates
chr11:66999037-67010563:+
Coord C1 exon
chr11:66999037-66999431
Coord A exon
chr11:66999432-67010479
Coord C2 exon
chr11:67010480-67010563
Length
11048 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTTTTCCCTCCTACCCTTAGATT
3' ss Score
11.45
Exon sequences
Seq C1 exon
ATTTGGAGTTAAATGGGTTGGAGTCTGGGAATGGGGATGAGGAAGCAGTGGATCGAGAACCCCGACGCTTGAGCAGCAGGCGTTCTGTCCTCACTAGCCCTGTAGCGAATGGAGTCAACCTGGATTATGATGGACTGGGCAAAACCTGCCGAAGTCTTCCAAGTCTGAAGAAAACTTTGGCTGGGGACTCATCTTCTGACTGTAGCCGGGGCTCCCACAATGGACAAGTGTGGGATCCCCAGTGTGCTCCCCGAAAGGACAGGCAAGTGCATCTGACCCATTTTGAGCTTGAAGGCCTTCGCTGCCTTGTAGATAAGTTGGAGTCTCTGCCACTGCACAAGAAATGTGTCCCCACAGGGATAGAAGATGAAGATGCTCTCATTGCTGATGTAAAG
Seq A exon
GTAAGGGTTTGATGTGTTACATGACAGCTACTGATCCAGCTATGGCAGTCAGCTTCCAGATTCAGAGGGAGAAAATATAGGAATTTTGGGTGATCTCTGGTTCAGTCAGAGAGAAGTTAATATGCATGTGTGTTTGTTATTGCTGCTCAGTGTTTTCATTACTAGAATGAGGTTATGTCCCTGTTTTGAAAATACTAACATTTATGTGTTCATTGAAGACTTATAAATTTAGTCTTAAACATAGGTTTCAGGCTGACCCCAAAAATAAAGTGACCCAAAGAAAATATTTATATAAGAAATGTTACATTAAACTTAAGTTACCTTGAGATAAAACTCAGGACAAAAGTGACTGATAGGAGTCTCATCCTAAGCAGATTGAGAGAAATGAAATTGTTCTATGCTGGGTTAACGTTGAGTAGCTTTAGCCTCTTTAGATTCAAATTTATCTAGCATCAAGACTTAAATACATTGGGAAAAGCATCATTTTAAAATAATTCATCCCATTGCTTTATCAAGTTTTATGTTTATTTATTTTTTAATTATACTTTAAGTTCTAGGGTACATGTGCACAACGTGCAGGTTTATTACATAGACATACATGTGCCATGTCAGTTTGCTGCACCCATTGACTCGTCATTTATGTTAGGTATTTCTCCTAATGCTATCCCTCCTCCAGCTCCCCTTCATATTGTATATTTTTCTTAAGGAATCCAGACTTGAGCTTTTTTTTTTTTTTTTAATTTTAATTAATTAATTAATTTATTTGAGACGGAGTCTCACTCTGTCGCTCAGGTTGGAGTGCAATGGCAAGATCTCGGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCAGTTCTCGTGCCTCAGCCTCCTGAGTAGCTGAGATTACAGACACGTGCCACCATGCCTGGCTAATTTTTTTATATTTTTGATAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCTTGACCTCAGGTGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACGGGCATGAGCCTCCACACCCAACCTTGAGCTATCTAAACTGGAGGAAATTATTTTAAGTCTTTCCTCCTAAGTAACAATTAATGTGAAGACCAAGAATTGTAAAGCTGGAAATAGCAATTTTATTTTTAAATCAGTGTTTGGAACAATGGGTATGTATATTAGAAAGCTAATCTACAAGTTGTAATGTTATTTTGAAAACCTCACATAGATTATTTTAAGCTACTTTTAAGCCATTTTATAAATTTAGGGGGGCCAGGCACAGTGGCTCACACCTGTAATCCTAGCACTTTGAGAGGCCAAGGTGGGAGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAAAAGGCTCAGTGCGATGTCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTAGATCACGAGGTCAGGAGTTCAAGATCAGCCTGGCCAAGATGGTAAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCAGACACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCCCTTGAACCTGGGAGGCAAAGGTTGCAGTGAGCCGAGATTGCGCCATTGCACTCCAGCCTGGGTGATGGAAGTGAAACCCTGTCTCAACAACAACAACAACAAATCCATTGGAGTAGTTTAACTAAAGTAGCTAAATAAGGAGATTTGAGGTGAAAGGGTGGTACAATGGTATACCAAAGGAAAAAGTAGAAAGATTTGGGTTAAATATTAAGCAGAGTCAGCAAGAAGAGAGGGGAGTTAAGAAGAGACATCTAAAGAGGAGGCTTAGCATTATGAAAAGTGTCCGGAGATAGCTTGCTTGTGTTTATCAGGGACCACTGAAAAACGTGACTGCCATCACTGGCTAAGATATAGTGGCAGAGGCCAGAGCATGAGGAACAAGTAGCCAGTGAGATGACTACACAGGCCGACAGTGTTTGAATTCTCCCTCCAGAGACTTGTCCACAGCTTCTCGTTTACCCAAAACCACAGTCAAAATGTAGCTGACGTCAGAAGACAACAGATTTAGATTCCAGCTCTGCAGGTGTAGTTTCACTTAAGATCAAATAGATTAATTATTCCTATATTTGATCAGTTATGCTAAATCTCAGAAAAGATATAGCAAGCTTAGAGCTTGAATACCTTGAGAATCTAAGCATCACTCAAAAGAAAAAAGCATTAGATTGGGTAGCTGCTGAATCACTGCACAGCTGGGGACTTTCAAGTGCTAGAAAACTTGGTGCTTATAGCACTGATGGCTATACTTCAGTGGGGGACAAAGCTAGTACAGTTTACCCTTCCTGCAGAGAAAGGAATTGTTTGCTGTTGTAACCTATCTGGCTTTCAGGAATAATTAGTAGAAGAGATGAGGGGAAAAGTGGTAGATGAGATATTCATAATATTCCAAGGAAAAATAGTGCATTTCAGTGCTGTGATAAAAGGGCTTTTTTTAGGTTCTAAGGCGTTGAAGAACAAGTCATAGAATATAGAGTTGGAAGAGGATTAAGTGAAAAAATAGGACATTAAAAAGTACTGACTTGGGCTGAGCCCAGTGGCTCACACCTCTTGTCCTAGTGCTTTAGGCGGCAGACGCAGGCAGATCTCTTGAGACCAGCCTGGGCAACGTGGCGAAACCTCACCTCCACAAAAATACAAAATTATCCAGGTGTGGTGGTGTGTGTTTGTGATCCCAGCTACGTGGAAGGCTGAAGTGGGAGGATCACTTGAGCTGGGCAAGTTGAGGCTTCACTGAGCTGTGATCTCACCACTGCACTCCAGTCTGGGCAAAAGAGTGAGACCTTGTCTCAAAAAGAAAGTAGGCCGGGCATGGTGGCTCATGCCTGTAGTCCCAGCACTTTGGGAAGCTGAGGCGGGCGGATCATGAGGTCAGGAGATCAAGACCATCCTTGCTAACATGGTGAAACCCCGTCTCTAGAAAAAATACAAAAATTAGCCAGGTGTCTTGGCGGGCGCCTGTATTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCCAGATGGCACCACTGCACTCCAGCCTGGGTGACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAAAGAAAAAAGAAAGGAAGTATTGCCTTACCGGTAAACTGGTAAAGCTATCAGCGTGTGTATGAGGTTCTGTTTGGGAGGGGTTGTGGGTAATGTTGACTCTTGAAAGTGTACATAGGTAGAATAGGGTTTTCCTACTATGAGAATTTTTTTTTTTTTTTTTTTGAGACTGAGTTTCACTGTTTTTGCCCAGGCTGGAGTGCAATGGCGCAGTCTTGGCTCACCACAACCTCCACCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGCACCACCACCCTGGCTAATTTTGTATTTTTAGTAGAGACTGGGCTTCTTCATGTTGTTCAGGCTGGTCTTGAACTCCTGACCTCAGATGATCCACCCGCCTCTGCCTCCCAAAGTGCTGGAATTACAGGCGTGACACCGCGCCCGGCTGCTTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTGAGACAGAGTCTTGCTCTGTCACCTAGGCTGGGGTGCAGTGGCGCCATCTCGGCTCACTGCAGCCTCCACCTCCTGGGTTCAAGTGATTCTCCTGTCTCAGCCTCTGAGTAACTGGGTCTACAGGCACGCACCACCACTCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTTGCGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCGGCCAAGATATCCTTAACATTTCTAAAATTGGAAAGTTGTATTCTTGATATATGTTGAATAAAAAGGTAGGACATGTAACAGTATGTATAGTACCATCCCATTAATGTAAGAAAAAGTGTATGCGTATTTGTGCATTGCAGAGGAATCTAAAAGGGTACATCCCAGCCTGCTAATAGCAGGGCACAATAGGATAGTAGTAGTCAACTGGAAGAATTTGTGGTTTTTTTGTTTTTTGAGATGAAGTCTTGCTCTGTCACCCAGGCCGAAGTGCAGTGGCGTGATCTAGGCTCACTGCAGCCTCCGCCTGTCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTATAGGTGTGTGCCACCACGCCTGGCTAATTTTTGTATTTTCAGTAGAGATGGAGTTTTACCATGTTGGCCAGGCTGGTCTTGACTCCTGACCTCAAGTGATCTGCCTGTCTAGGCCTCCCAGAGTGCTAGGATTATAGGCATGAGCCACCACGCCCAGCCACAATTTGAGTTTTTAATCAGATTGTTGTTTTTGTTGGTATTTATTTTGGTGATAAAGTAGTTCTTAATATATATGCATATATAAAAGAAGCTTTTTATATAACAATATATCTGGCGGCCCAGCTCACTTAATAAAGCAAATTCAATATTGTTGAATACTTTTCGACTTTCCTGTTTTCTCTAAACATTTTGATAAGCCTGCCAATCATACTTTGTGACTTTTGGGTAAGTTACTAAATTTATGGAAACCTATTTTCTCCTCTATAAAATATCTGTGAGATTGTTGTTAAAATTAACAAGATTAGTAAAATACTTAATAAGCAGTGCATTATTACAGCCAGAAAAAAGTTAGATGTTACAAATCTATGAAATTCACTTATTCCACCGCTCTGAATAATGCCTGCCTGCTCTGTGTCAGGAATCAGATTGAATGTTAAGGAAACTATGCAGACATGCCGTGGTCCTAGCCCTCAAGAGCCTTAGAGTTCAGTGGCAAAGCAGATATAAAAGTGGGCTAAGAAATAGGAAATAAGTGCAGTCCAGGTTTGTAGGTGCCTGGCATGACACAGGGCACAGAGAAAATGAGTGAGAGTGGCAGAGTCTATCCTGAGGGAAAGAGATGTTCCAGTCTTAATTCACCAGCTAATAAACTTTCCTGTTATAGGATATAAATTTATTACTACAACATTATATAAATGGTAAAAACTCTGAATTTATAAATTGGAAAATTGTTATTTGTGATGTAATAGGCTACTGATACTCTTATCTAAGAATCTTAACATTTTATTTTGGAACTATGATCTAAAAATTTATGTTAGGCCCCATCCCAGGAGTATGATGAGATTGAAGCAGAAAGGGTTATTGTTGCAAATAACTCCAGAAATACTAATTAGGAATTCTCTTCAGTTGATAATTTGGGGGTTATTCTGACACTAATAGAACTAGAAGAAGACCCAGTATAGTTAGCTCTTATTCCATTAAGCCAGATTTTTAAATGTTTTTAAATTTTTCTTTATTATTATTATTATCATTATTATTATTATTAGCAACGAGGTCTTGCTGTGTTGACCAGGCTGGTCTTGAATCTTGAACTCCTTGCCTTGAGCAATCCTCCTGCCTCGACCTCCCAAGTGCTAGGATTACAGGCATGAGCCACCTTACCCAACCAACTCAGCTTTTTGTTTGTTTGTTTGTCCTGGGTCCAGGCTTACAGATTTTTTTTTGTAAAGCAACCTAGGCCAGATGTGTTAGCTCATGCCTATAATTCCAGCACTTTGGGAGGCTGAAGCAGGAGGATCACTTAAGGCCAGGAGTTCAAGACCAGCCTGGGCAACATAGTGAGACTCCATCTTCAAAAAAATTAAGAAATTAGCTGAGCATGGTATTGTGCACCTGTAGTCCCAGCTACTCAGGAGGCTGAGGTCTAGGCTGTAGTAAGCTGTCATCTACCACTGCACTTTAGCCTGGGCAACAAAGCGAGACCCTGTCTGAAAAAAAAAAAAATTTATATCCTGTTATAGGATATATTTATTTATACAAATAAAACTTTATTTGCAATATTTACTAACAAGATATTTGTAATAATTCATACATTCTTACTGAATAGAAAGTTTTAAGTAATGTAACTCAGTTATGAGGCATATATGCTTAAAGTTACATATAATTATTTTAAATATTTTCCTTATATTCTTGTATTATGTAATGTCATGGTCTTAGTAATTCTTATCTTTTTTGCCTATCTTTTATTCTCAATTAGCAGGAGGGGGTAAAGTTAGGCCTTGTTTAATTTGTGATTTGGAAACTTACTGGGAGTGAGTTTCCTAGTGCCCGATGTGATTTTTTTCCTTTCCTGGTGGCCTCTAGAATTTGCACTTGCTGCAACTTGAACTTACGTTTGTTTTAAAGTAATATGTTTTCTCTTAAGTATTCATACTTTACTATCTCTATAATATAGATAGCACTGAAGATCAAAATAAGCATTTTCCAAGAAGACCTCTCAATAGCTAGATCACTGTTAAGGAAAGCCTTTCAAACAAAATAAGCCGATTGCAGTGGGTCTTGAGTCTTAAGATACAGTGTCCGGGAGAAGTTTAGGGTTAGGATGACCATATAAGCATTTCCAGGAGAAGCTCAGCCGAGAGCACAAAAGTCTGTCCTTCCCCTGGTAAACTACTATAAAAATAACATATGTAGCCCCTGGCAGCAAAGCTCCAGACTTTAGAAAGCCTAGTTAGCCACTAAATCTGTACCAGAAACTCACTCAAACAACTGTCCTGGAAATAAATAAGAATGCTTAAGAGCTAGATGCTTAAATCAGAGCATCTGCAAAAAAGGCAAGTTATACATTTGTAAGGGTCTAAAAGTCACATAAAAATCACATTGGCTCTAAAAAAGACCCAAACTGTTTCTGCTAAGTATTTGATTCCTACTCAGGTTCTCCCATGCTGATGTTTGGTACACTGTGGATCACTAGAAACTCAACCAGAGTGTGCACCCTCCTTTCCTCCTGTAGACTGAAAGGAGTGTGTGTTCAGTCTGAGCTTCATCCCAGCTGGGGATCCGGGGATCAGGGTTTGTTGTGCAGAGGTGTGAGCAATACTTGTCAGTCCGAGTGGCTGTGAGAAGGCAGTGAGGTGTCTTGACAGGATGCAGGACTGGCTGCTTCATCTGGGGAATATCAAGAATGAGACAGGCAAACAGACTTGAATAGAAATGGAAATCCAAGAGTACAATACTGGTATTCTGAGGGTAGGATAATCTTACAGGCAGAGGAGACTGCTGGAATTGGGAGAATGTGTGTTCCCTGGCTTCCTGCACCTTGTTTAGAGGCAGGAGGGCAAAGTGTGTTGTGCCTCAGTTGTTTGACTTGGTCACGGTGGAACTGCTGCAGGATTGCTGCGCAGACATTTCTAGTACTGTACTGTGGGGGTGGAGTCCTTGTCAGAATCAGAAGCAGGCATCTGTTTTAGATGTAGTTGATGTTAGCCGTATTTTATTGAATATCTCAATATTGGCTGACATGGGCCATTTCTGAAGGTTTTTTGGAACACATAGGCAGATTCTGGATTGTGGGCTGGGAGCAAGTCAGCGAGGGCAGGTGAAGCAGGCAGTGTGCCGGAGAGAGAAGATAACTCAAGAGGAACTCAGCTCCTGTGCCTAGTTCATCCAGAGAGGCGGAACTTTGGGCGACCCCCTCTACTTGCTGAGAGGGGAGAGAGAAGTGTGTGTGCAGTCAGCCAGAGAGCTCTGGCAGTAACAGTGGTAACAGTGAGAGGTGACCCTGAGGGGAAGGGTGTGGACTGAAACAAGGACAAATGTGGGCCAAGGTGCCTAGTGTAGCCCGCAGAATGAGTTAAAGCCTTCCCTTTGGCTGGCGCCTTCAGAAGTCTGCCACCGGGAGCCCTCAGGGGGCTGGCCCTAGGTTCTCCTATTGCAGTGGTGGTGGGAGGGAGACAGGGCGGGGGCTGTGGCTGAGCTCTCCTCCCTGGCAGGGCCTCTTCCAATCGCGAGGAAGAAAGCAGTTGCTGAACACACCCCCTCCCGGCTCTGCAGCAGAACGGCTGGGCCCTCTGCCTGGCTCGCTCACTCTCGCTCGGCTCCCCCTCCTGCCATCTTCCGTTGCAAAGCATTTCTGGGAGCTGCATGTGGGTGACGCAGCAGCATTGTTCGCAGGCACAGGAAGCCGCGGCTGAGCTGAAGGGCTCGAGAAGGAGCCCAGAGCGCTGCACGCTGCTCCCTCTGGGTAGTCTGAAGGGTCAGAGCTGGACTGCCCTGCCCTATGTGCTCTGGGAGATTCCAGAATATTCAAGTAAATCCGGATTTTCCCAGAGGCAGAATATCTAACTCCTTCAGGAGAACTTCCAGTACAGAAAACAAAACAAAGACGCTGGGGAAACTTCACCAAGAGCCTCGGCAGCTCCAGAGCGACGGGAAACGAAAGGTCAGGGGGTCGATCGGCAAACCCTTTCTGGTTTGGGGTGCGTGTAACTATAGGGACTTTTGTCTCAGTGAAGAGGCAGGAGAAACTGCCTGCCGGGCGAGTCCAGGACAATGCTATGTTACTTCGTGTTGCTTGAGCCGTCATTGCACTTGTTCCCTCACCTGGTGGGATGTGCTTTTGAATTGGGTTGGTTGGCTTTTGAGAATCCTTTCCCTCTCTGCCCAGGCACCTTCTGTTCTCTTTCCCTTCCTGTGATCTGTAGGGTGTGGGCTTGTGTTTAAATGTTCTCCCGAATGCCTGGAGCCGAGATAGGCGTCAGCCTTTCCCGCACTCCACCCCCGCTCTCCTATCCCAAACCCCCTCTAGTGAAGGGTGGTGGCTTCTTTATATGGTTTCTTGTAGGGCCTCAGCTGGAGTCTGCCTTTTTTGATGAAAGCAGGGCGTGCTTGGTTGAATGGCCCCAGCAAAATAAGGCTTGGAAGGAAATCTGCATTTCCCTCCACACCCACACATACCCCAGTAACTGAGTCTTGTATGTGTGAACAGCTGCCACCCCCCACACACACACCGACACAGTTTTCCGCCTACCCTTCCCTATTCCCCACAAAAATCTTGCAGGTAGAATTAGACTGCTTTTGGTGAACAGTTAAGTTCCTTTTCTACTCTTGAACAATCGCAGATCTTACTGTGCAGTCTGTTTTGCTGAAAGTGGAAAGTCCCCGTTTGTGGACAGCTCAGTTCACTTCAGCAGAGGAAATGGGCAGAGTCCTACTCTTCGTCAGTGCGAAGTGGGGGAGGGGAGCCATGCACTCCCTAGCACACATTTTGAATGGACCTGAATTTTTCACCCTAGGGAGATTAGGAGCCCATACCAGAGCCTTGTCCCACGTGGCACCACACCCCGCCTCTTCACCCCCACGCTGTATGGTACTAACAGAAAAGGATGCCATAGCAACTTGAAGTAAATAAAACATCCGCAGATGAAATGAGTTTGGGGGAAGGTGAGAGGCATCTGGAGACTTGGCAAAAGGGGATCTTAGTAGAGGAGCTTCTTGGCTATGAGTGAAAGGGTCTTTCTGAGACCCAACTTTGGGATTTGGAGCAGGATCCTTAGGTTAAGAATGAAAATACATAAAAGTCCTGGTCTCCGGGACAGAGCACACAGGATTATGAGAAAAATTATTAGCAATGGCCCAGACTTGCTAACCTGTCCAGGATCAGAGTTTAGTGTTTGCCGAAACAGTTACCATCCTGTACATACATACCTAGGGTAGCCAGAAAAGGAATCATGTAACTTGTCTCCCAGATTTATTTTGCTGTTGGTGTTGCTTTAGGGCTCATAAGGTCAGAAGAAGAAGGATTCCATTATACTAGAAGATTTGGGTTTCAGGAGTTTCTGTCTAAAACGAAAAGATTTGGCCAGGTGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAAGCGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACTCCGTCTCTACTAAAAATACAAAAATTAGCTGGGTATGGTGGCAGGTGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATAGCTTGAACACGGGAGGCGAGGCGGAGGTTGCAGTGAGCCGAGATAGCGCCACTGCACTCCAGCCTGAGCAACAGAGTGAGACTCCATCTAAAAAATAAAAATTAAAAAAAATATATTTGTTTCAAAATAACAGTCAACCAGTGTGATTCACTTAAGTGGCATTTTCTCACTGTAGCATTGTTCGTAAGTCATTTAAATTTTATTGGTAATGCCATGAGAACTTTTGCCCCTAAGATTGTTCCTTTCCCCCATTTAGAGGAATAAAGGCAAATAGCAGACTCTGTGGGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAAAGAAAGAGATTTGAGATTGAGATTTCTGTAATCAGCCTTAGAAGAAAAGAGCCCTGGGTTGAATCTGCACATTAGGCTGTACCATTCATCTCATTAATTCTGTATTAGCAAATCATTTTTATGCCACTTGGTTCACATCTGAGAAATGAAGGCAATTACCTGATAATATTCACTAACTGGTGTAGAAAAGTGAAGAAGCAATAATAAAGTTTTACTGTCATATGTAGAACTGTATGAGAAGTAACACTTGTCACCACAGTAAGTTAGTTGTTTCAGTGTGTTAGTATAATTAGTACACAAGTAAGGGATTGGGAACAAAGGTGAGTTTGAAGTCCTTTCTGCTCCCCCACCACCACCATCCGCCCCCAGTAGAGATGGGTCTTGCTGTGTTTCCCAGGCTGGTCTCAAACTCCTGGCTCAAGTGATCCTCCCACCTCTCACAGGCATGAGCCACTGTGCCCAGCCTCAAAGTTTTGATAATATTGCAGCAGCCTAAGTTTGAGTTTTCTCCTTCACCTTTGATTTATTTGTTTTCCAGTGAGTCTCTATATGAAGGGCAAATACAGACAGTTGCCACCCTGCCTCCCTTGCTACTCAAGGGTACTGAGGCAGAGTCTGGATGCTGTTCAGGGTGGTTGGCTCTTTGTTCACCCTGCCCTGATTTTTCCTTCTTTTCCCTCCTACCCTTAG
Seq C2 exon
ATTTTGCTGGAGGAGCTTGCCAACAGCGATCCCAAGTTAGCCCTCACTGGAGTTCCTATAGTACAGTGGCCAAAAAGGGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173120-KDM2A:NM_012308:12
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=NA C2=0.036
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)