GgaINT0002799 @ galGal3
Intron Retention
Gene
ENSGALG00000013286 | KDM2A
Description
NA
Coordinates
chrUn_random:27620024-27625524:-
Coord C1 exon
chrUn_random:27625109-27625524
Coord A exon
chrUn_random:27620108-27625108
Coord C2 exon
chrUn_random:27620024-27620107
Length
5001 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGT
5' ss Score
10.75
3' ss Seq
TTCCCCTCCCTTTCCATCAGCTG
3' ss Score
8.73
Exon sequences
Seq C1 exon
ATATGGAGCTGAGCTCCTCACACTCAGTAAACATGGAGGAAGAGGAGGAGGAAGAAGAGGATGCAGCAGGGAAGGAACCAAGGAGACCGATCACGAGACGGTCTGTTCTTACCAGCCCCGTAGCCAATGGTGCCAATGTGGACTATGATGAACTGAGCAGGAGCTGCCGGAGCAGCCTGCCGGCTCTGAAGAAGAGCCCATCTATAGACTCCTCTGACTCTAGCCGAGGCTCCCAGAATGGCCAGGCCTGGGAGCCACATGGTGGCAGTCCACGCAAGAGCAGGAGGGTGCACCTGACGCAGTTTGAGCTGGAGGGGCTGCGCTGCCTGGTAGACAAGCTAGAGTCACTCCCTCTGCACAAGAAGTGCGTTCCCACTGGCATCGAGGACGAGGATGCTCTCATCGCTGATGTCAAG
Seq A exon
GTACGTAAGCTTGGGAGCACCACGTGTGATGCTGCTCCCTGGATGTGTTTGTTTGCTGGTGTATCAGAGATGAAAACGTACCCCCCCCCCGCTCCCCCCCCCCCCCCCCCAAGAGGAATCCGTGTGCATTCATGGTTTTAAACTAGTCATGGGGTGATGCGTCTGCAGGTTTCTTCTTTCCATTATGTAAGGCAAATGTCGCACTGGGTAATGTTGAACCAGCTGATGCTGCAGGACAGCCCTGACTTGGAGTTTGGCTGGGCCCTGTCTGGGTCCCTTACACGTGCCAGAGCTCATTTGCAGTGTGGTTTGTGTCATGTTCGGGCTCTGGCCTCCTTGGGCTGTTGGATGTTGTGATAGTTGGAGCGCCTTGTTCTGGGTAGAATTGTCTGTGTTTCTTTGGGTTGTTCACACAAGGTGTTGATCCTGGCTTATATGAGAGTCTTCATCCAGCTTTGCACCCTGTGCTATACCTGATCTGTTTTGTTGCCTCTATATATCATAAAATCACGGAACATTCAAAATGAGAGGTGACTCGCAGGGGTCATGGAGTCCACCTCCTTGGTGTTTTAGCCTTTCCAGTGTTGAAGTGAGAATTTCAGCCTGTGTTCCCTGTAAAGTCCATCTTAGTTCCTTAACCCATGATTTCTTCCAACTCCCTTTCTTCCTGACGGGGACCTGCTGAGCTGCCTGTACCAAAGCTGACACCCAGACACAGCCATAGGAGCACCCTGCTCCTTGCTGTTCCTTCTCCAGGTGCAGTCTCCAGACTTTGAGGGGCATTTGGTAATCTGTTCTGTGCTGGGGACAGCAGCATGCGGCCTGTGGTCCTTACTGACGCCATGGCTTGCAGATGCTGGAGACACTTGGCCACAGGAGCCTGTGTGAATCTGTTAAGGGCTGCAGCTCCTCTTCCCCCTGGGTTTTTCAAGTTGTCTGAGCCACCATGGCCCTGCTTGGACCATACAATGCTGCAGAGAAACACCAGCTGTGAGCAGGTTTCTCCCTTGGGAATCTTGGTGGTTCTGACCAGACAGAATGCCCCAACACACTTTCAGCTGTACTCTGCTAGCCTGTGTCCCCAGGCACAGACCTGGCAAACACTGCCTTTCCACGCTGTCTCTTGTGTGGTGATGGTGAGTTTCAGGGTGCCCATGTGGGTCATGTGGAGAAACGTGTTGTTGCATCCAGTCACGAGTTGAGCCCAGAGTTGTCACGTGCTGGCACCTGACACTTCGGATGTGACAAAGACCTGCTTCCAGCTCTGTGCTAAGAGGGGCTGTCTGTCCACTGACACTCTGCAAAGCCGTTCCTGAAAGGGCTGCATCAACATTGTGAGCAGGAAGAGCACGTTGCTGCCTCTGTCTCCACCTTGACCTCTTAGTTTTGCCTGCATCCTTTGGACAGTTCCTGGCAACACTACATCGCTGCTATTTGCTCTACCATAGCTTAAATGAGAGGGCCTGTAGGAATCCAAGTGACTGCTAGCATGAGAAATGAGGTTGATGCATCTGGCACTGCTGTCTTGCTGAAAAATCTCCATGAATTTGGTGATACCGTAGAACGGTTGGGTTGGAAGGGATGTCAAAGCCCCACCAGCCTCACCCCTGCTGTTGGCTGGTTGCCCCCCACCAACCATATCAGGCTATCCAGGGCCCTATCCAGCCTGGCCTTGAGCACCTCCAGCTGTATCGCTGTCCATGGTCTGGGTGAGTCACTGGAAGGATCATTGGCATAGACGAGCACATGAGAGGTCCTATCACCTATGGACTGCTTCTGCCCATCACTTTGGATCCTCATTCCTCTGAACCAGTAGAGGAACAGTCACAGACTAGTTGCATTTGGGCTCTGCCTGGAGGTGCTAGAGCACTAGCACGTACCTGGTGCGAGGTCTGCCCACATCAGACAGAGCCATCTCCTTGCTCTTCTGCCAGCGTTGTACTCTCCCCTGCCTGCTCTGCTTCTCTCATGGGTAACATCTGCCCAGAACGGTCCCCATGCTGTCCCATCCCTGCCTCTGGAGATCTGCCAGGTGGAATCTACGTTCCCAAGGCAGTTGGTTTCTCTAGGTGCTCGTGTCGAAGAGAAGTGGCGATTGTGGCATCCTGCTGAAGCCTAAGGGATGTAAAAGCACTTGCTCCTCTCAGGGGAGGATCAGTGATCTCAAGTCGCTCCACGGGTAGTCTGGTGCAGAGGTGGGGAACAGAGGCTGCTCGCACCACAGCTGGACAGGGCAGGTCAGGCTGTGAGGCTCCCTGTGCTGGTGTCATGGCTTTTGCAGCACATCTCATGCTTCCCACATAGTAGACTGGGCTGAGGACCCCTTTGCTGTCCTTCCTGAGCAGAGGTAACCTCCACATACGGTCCAACAGGCTTAGCATTGATGAAGTGCTGGAGAAGCCCCCAAGCTGCGCTGCAGATCTGAGCGTCCCCACTGCACTGCAGCTGACCCCCAGAGGGCACAGGCCTGCATGCTGGGGCCGTGATGGAGGTGGTGGTAGTCTTAGCACTGGGTCTGACAGCAGAGCTGGGCAGGGCAGATAAAAGCTGCAGTTGCCTGCGGGAAGTCACGTGTCAGGCACGGGAGCGGCTGCTTTCCCCTAGTGCTGCTTTTGGGGACTTTCAGTGCCCCCTCCACGTTACTGGGACCCACGAGGGTCTTGGAGAGCTGTGGTGACCTCGCTGCGGGGCTGTCCTCCTCTAGTGCCGAGGTCGCCGGTGCCTCTGGGGCCATAGCTGCTCCCAGACTTGATGGCGAGATGCTAGTGCCTCCAGGCTGGGAGGGTACGGGTGCATTCCCCGCATTCTGGGGCACTCCTCCCCTCACCTTGATTCGAGCCCTTTCTCCCTACTCACGCCCAGGCGGTCGGCTTCCAGCAAGATCCCGGAATCTGCTCCACAGGAGACAAAAGGAGGCTTTGGGGTGGCTCTCCCTCGACCCGGGGACATGGCCGCGTTCCTCCGGTTGCGGTGGCGGCGGCGGGCGGGCGGTGGGCCACGTCGCCGGGCCCCTCTGCACCAATTGGCGCGGCGTAACCGCCGTGCCGCCCCTCCCGGCTCTGCAGCAGAACGGCTCTGCCCTCTGCTCGCTCGCTCTCTTTTTCTCTTCTGCCATCTTCCCGTTGCAAAGCATTGCTGGGAACCGCATGTGGGTGACGCAGCAGCATTGTTTCAGGCTCAGGAAACCGCCGCTGCTGCCCAAGGGCTCGAGAGGAGCACGCGGCTGCCGGCGTGGCTGCTGGATGGAGCTGGGGAGGAGCCGGGGCCGCTCGGGGCGGGGGGCGCGGGCGCGCTTCTGGCCATGTCCCTGAGGACTGTGGATCCGGCGCGGGGCCGCATAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAGGCAAAAAGGGGGGGGCCCAGCCCTTGCCGTGTGGGCACCGAAACAAAGAGGGCTCGTCAAACTTCGCCCCGGAGTGGCGGCCGCTCCGCAAGCGCAAGGTCAGGCGATCGGCAATGCATGCGGGACAGGGAGGGGACGCGGGGACGCTCTGGGACCGCGGGGGCACCCGGGGCTCCGGAAGCTGGGGGTCCCCGCTTTCTTCCAGCAGGCGCTCGGGCTCCCCTCTCCCCTTCCTGTCCCTGGGACGTGCAGCCGGGCTCCCGTCCTCGCTGCACCCTTGAGCCCCCTGGGTCGGACCCACCGCCACCCCCCGCCGCAGCTCCCTGCGCGTACCCACGTGTGCGTGCATGCACCCTTGGTCCCTGACCTTCTCTTTCTCTTTCGTGTCCAGGGACGGTGGGCTGGGAGGCGGAAGGGCTGCAGGCAGTGCGCAGAGGAGGTCGTGGCTTCCTGTCTGTGAATCAGTGCGGGGTTGCGGTGTTGGAGCCAATCTCTGGGGATAGGGATGGGGTCGCTAACCCTGCCTGGCCGAGGGGATGCTGGCTGGAGGCTCCTGCTGGCGTGGCCATGGCAACACCACGTAAATAAAGCACCTTTGCAGCAGGCGCGTGTGGTGGGCAGAAGGCTCAACCTCCTTGGAGAACACGGGGTGCTCAGGAGATAACTCTCAGCGGGGTGCTGGGGTGCAAGTCCCAAGGCTGTGGGGTGGGGGCGAGCCTGTATGCTTCCTCGCCCCCATACATCCCACAACGTCTCTGAAGCTTGCTGCTCTCTCCCTGCCCCTGTGCAGGGCCTTGGGGCTGACATGCAGTCAATGAAAGCACTCATGCAGTCAACTCAGCGGAGCTTGTCTGGAACATGGGGAGGGCTTGCTGCTGATGGGCATGGGGAGAGCAGAGATCCTTGCCAGTCTTGCCTGAGGCACGCTGGCCCTGGCATCTGCTCAGAGCCCACCTGGCTGGCAGGAGCATGATTCCACTCTGCTCACACTTGTCCTTTTTGTCTTTTGTGCTTCTGTTCCCCTCCCTTTCCATCAG
Seq C2 exon
CTGCTGCTAGAAGAATACGCAAACAGTGATCCCAAACTGGCACTTACAGGCATCCCCATTGTCCAGTGGCCTAAGAGAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013286:ENSGALT00000021696:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.489 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]