BtaINT0080661 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019427 | KIAA0232
Description
KIAA0232 [Source:HGNC Symbol;Acc:HGNC:28992]
Coordinates
chr6:118157451-118164556:+
Coord C1 exon
chr6:118157451-118157532
Coord A exon
chr6:118157533-118161246
Coord C2 exon
chr6:118161247-118164556
Length
3714 bp
Sequences
Splice sites
5' ss Seq
AATGTACGT
5' ss Score
6.58
3' ss Seq
TCTCTTGCTTGTTTTTCCAGGTA
3' ss Score
11.24
Exon sequences
Seq C1 exon
AAGAGAAGATTCACAAGAAGTTAGAGGGGTCTCCCTCTCCAGAGGCAGAATTATCGCCCACAGCGAAGGATCAAGTGGAAAT
Seq A exon
GTACGTCAGGTTGTTCCGTGATAAAGCCGCGCTAACGACTGCCCTGCTGCGTGGTTGACAGGTTTAGTTTGCCATCTTCGGTTTAGTTGCTATTTTATGACTCAGGAATCTATTGAGCACTTACTGTGTGCCTGACACAGAGAGCTCAAAGGTGAATGAGCTGGTCTTATCTTTTTTTCACATACATTGAATCAATATTTGTGAAACTGATAAAATGAACAAGGTTATTATTTATGGTCCGTTCACACATGACCTTTGAAATCCAACGCCCGTCCTTTGAGCCAGCTGTGGGAATTAGGATTGTCCTTGTTTTACACACAAGGAAGCCAGCTTCCCACTACTGATTACCGAGGGAACCTGGGCAAGTCATGAACCCGCGTCAGACTCGTTTCCTGAAGATGCTTTTCTGCTTTCTTCATAAATGGTTTGTATTTAAATTGGCCTCATTGTAAGCAGACTTCCTTATCATACAGGTCATTGGAATCTTCCAAACTTGTAAATCTTAAGCGGAAAGCAGGATGTCGTTGGTCGTGTGGTGTGTGCTATCCGGTGTGGCGCGTGCTGTCCAGCGTGACATGTGCTGTCTGGTGTGGCGTGGCGTGTGCTGTCCAGCGTGGTGGCGTGTGCTGTCTGGTGTGGCGTGACGTGTGCTGTCCGGCTTGGCGTGACATGTGCTGTCCAGCGTGGTGGCGTGTGCTGTCCAGTGTGGCATGGCATGTGCTGTCCATCGTGGTGGCGTGTGCTGTCTGGCATGGCATGGCATGTGCTGTCCAGTGTGGTGGTGTGTGTTGTCCGGCATGGCGTGGCATGTGCTATCTAGCATGGTGGCGTGTGCTGTCCAGTGTGGCGTGTGCTGTCCAGCGTGGTGGTGTGTGCTGTCCAGCGTCATGGCATGTGCTGTCCGGCGTGGTGGTGTGTGCTGTCCGGCGTGGCGTGTGCTGTCTGGCATGGCTTGGTGTGTGCTGTCCAGCATGGCATGTGCTGTCTGGCATGGTGTACTCTGTCCGGCGTGGCGGTGTGTGCTGTCCAGTGTGGGTTGCATCCCGACCCCTAGAGTCCAAAGATTTCATATAAAAAAGAATGTAAAGCATTACATTAGTGTTTTTACTATTGCATATATGTAAACTGATCATGTGGATATATTTGGCTGAGTAAAATACACTGTCGAAATTAATTTCATTTGTTTCTTTTTACACTTCTAACGGGACTCCGAGAACATTAAAAATGACTTACAAAGCTCACAGTATGTTTCCATCAGACAGCTTGGTGTAGACTGAAAAGGAGAGTCCAGCATAGGCCCTTGAAAATCCGGCCCTGCATCACTCTGTGTGTGACCTTGGCTGGCCTCCGCGATGACAGTCCCCACTCTGGCAGCCAGTCTGACTCTCCTGAGTCTTCCTTGGCCAGTCTAGTCTGTCTCGCTCTGAAACTTTCCGTGGCTACCAGTTTCCTAGCAGACCGAAACCCTGTCTCCAAACGCTTCCACGCCAGCCTCCTGGTTTCCCGCCCCATGTTGCAGGAGCCACTGCTCTCCCGAGGCGTGGGGCCAGTGTCTTCGTATCCTCGCCCAGGTTCCCACGCCGCACAGCCGGCGCTCACCAGACCGCAGCATGCCTGGAGCATCAGGCTCAGGTGTGGTCCACCTCATCTGATTGTTTCGGGCCTCACCAGAATCCATCCCCTTTCCCGAACCCTTAAATCCCACGATCGCTGCCATTTCCGATGGCCTGCTTAACCAGCGGGGCGTCGCACTTGGCTTCTGAGGAGGAGACACGGTGGCAGTCAGCGACTCACTGTGCATGTTAATTCCTCCCCTCTTCACAGCTCTGTGAGGTAGGTACTGTGTTCAGCCGTTTTCTAGGCCACGGGTTTAGGACCTGTGCCTAAGGTCACAGAGCTGGCAGAGAGCAGAATGAGGACTCGGGCCCAGGGAGTGTGGCTTCAGAGCGTGTGCTCGCAACAACTTTGCTCTCCAGCTCTTCACCCATATGTTTCTAGTGCGTGTGGCAGCCGTGTAAGAGAGGCCCCGGTACCCCCGTTTTCCAGGTTTTCTGTGCGTGCCAGCCGTGTGAGAGAGTTCCCGGTACCCCCGTTTTCCAGGTTTTCTATGCGTGCCAGCCGTGTGAGAGAGGTCCCGGTACCCCCGTTTTCCAGGTTTTCTGTGCGTGCCAGCCGTGTGAGAGAGTTCCCGGTACCCCCGTTTTCCAGGTTTTCTGTGCGTGCCAGCCGTGTGAGAGAGGTCCCGGTACCCCCGTTTTCCAGGTTTTCTGTGCGTGCCAGCCGTGTGAGAGAGGTCCCGGTACCCCCGTTTTCCAGGTTTTCTGTGCGTGCCAGCCGTGTGAGAGAGGTCCCGGTACCCCCGTTTTCCAGGTTTTCTGTGCGTGCCAGCCGTGTGAGAGAGGTCCCGGTACCCCCATTTTCCAGGTTTTCTGTGCGTGCGGCAGCCGTGTGAGAGAGGCCCCGGTACCCCCGTTTTCCAGGTTTTCTGTGCGTGCCAGCCGTGTGAGAGAGGTCCCGGTACCCCCGTTTTCCAGGTTTTCTGTGCGTGCGGCAGCCGTGTGAGAGAGGTCCCGGTACCCCCATTTTCCAGGTTTTCTGTGCGTGCGGCAGCCGTGTGAGAGAGGCCCCCGTACCCCCGTTTTCCAGGTTTTCTGTGCGTGCCAGCCGTGTGAGAGAGGTCCCGGTACCCCCGTTTTCCAGGTTTTCTGCGCGTGCCAGCCGTGTGAGAGGTCCCGGTACCCCCGTTTTCCAGGTTTTCTGTGCGTGCGGCAGCCGTGTGAGAGAGGCCCCGGTACCCCCGTTTTCCAGGTTTTCTGTGCGTGCGCAGCCGTGTGAGAGAGGCCCCGGTACCCCCATTTTCCAGGTTTTCTGTGCGTGCGGCAGCCGTGTGAGAGAGGCCCCGGTACCCCCGTTTTCCAGGTTTTCTGTGCGTGCCAGCCGTGTGAGAGAGGTCCCGGTACCCCCGTTTTCCAGGTTTTCTGTGCGTGCGGCAGCCGTGTGAGAGAGGTCCCGGTACCCCCATTTTCCAGGTTTTCTGTGCGTGCGGCAGCCGTGTGAGAGAGGCCCCCGTACCCCCGTTTTCCAGGTTTTCTGTGCGTGCCAGCCGTGTGAGAGAGTTCCCGGTACCCCCGTTTTCCAGGTTTTCTGTGCGTGCCAGCCGTGTGAGAGAGGTCCCGGTACCCCCGTTTTCCAGGTTTTCTGTGCGTGCGGCAGCCGTGTGAGAGAGGCCCCGGTACCCCCGTTTTCCAGGTTTTCTGTGTGTGCGGCAGCCGTGTGAGAGAGGCCCCCGTACCCCCGTTTTAGGAGATGGCCTGTGCCATTGCACGCGTAGCTTAACGTCACAAACGGAGGAAATGAGCTGACTCACGTTCAGACAGTCCTCATCAGAATGTTAGCATTCTTCCCACCGTATCCCATTTGTACTTTGTGACTTTACGAAAATCCAAAGTTTAAAGTCGTCAGCTTAACATACTCTCTAAGTATTCCTGTAGCACTTATCTCGGTGTTGAACTTCGAAGGTGCTTGATCCATGGACCTAAATTTAAAGGTTTTACTGTACTGTCAAATTTTTTTTAAGTTGCTCACTCATGGATGCCGTGTAAACACTGACTCTGTTGAAATGAAATACCCCATTTCTAGACGGGTGACATTGTTTTTCTATATTGGGTAACGCCCTGAGCGCCCACTTCTGGAATCTCTTGCTTGTTTTTCCAG
Seq C2 exon
GTACTATGAAGCGTTTCCACCGCTGTCCGAGAAGCCAGTTTGCCTGCAGGAAATCATGACCGTGTGGAACAAGTCCGCCGTCGGCTCCTACTCGAGCTCGTCCTCCTCGTCCACAGCCCCTCCAGCCAGCACAGACACGCCCTCCCCCAAGGATTGCAACAGCGAAGGCGAGATCATCCGGGAAAGAAGCGGCGACGCGCCGCCCGCCAGCCTGCACGAGAGAACACAGAGCGGCCGCAGCCACAGCGAGAAGGAGAACAGGTTCAGGAACGGGCCCAGCGAGGAGCGGTCCGCGCCGCCGCCGCCGTCCAAGAAGCAGAGCCGGCACCGGCCGGACGGGAAGCCGCGCCCGCGCTCCTGGTCATCCGGCTCCAGCGAAGCCGGCTCGAGCTCCAGCGGGAACCAGGGGGAGCCCAAGGCGTCCGCGAAGTGCGTGAAGTTGAGGCACAAGGTGCGGGAGATCCGGAACAAGAAAGGAGCGCGCAGCGGGCAGAGCCGGCTCTCGCTGAAGCGCGGCGAGAAGGCGGAGAGAAGCCCACACGCCGCCGGGAGCAGCAGCAGCAGCGGCGGTGGCGGTTCCTTCCGACAGCTGTGCAAGCGGGGCAAGCGGCCGCTGAAGGAGCTGGGCAGGAAGGAGGCGGGGGGTGCCGAGGGCAGAGACCTGTTCCTGGAGAGCAGGACGGACAGGGAGTACAAGGAGGAGCCGCTGTGGTACACCGAGCCCATCGCCGAGTACTTCGTCCCTCTGAGCAGAAAAAGCAAGCTGGAGACCACGTACCGCAACAGGCAAGACGCCGGCGACGTGACCTCAGCAGCTGTGGAGGAGTTGTCCGAGTCAGTGCACGGCCTCTGCATCAGCAACAATAATATTCATAAAACATACCTCGCAGCAGGTACTTTCATCGATGGTCATTTTGTAGAAATGCCTGCAGTCATAAATGAGGACATCGACCTCGCTGGGACCTCATTCTGTCCTCTGCCAGAGGACGACAAATACTTGGATGATATTCATCTGTCAGAACTAACACACTTCTACGAAGTGGATATTGACCAATCCATGTTGGATCCCGGTGCCTCAGAAACCACGCAAGGAGAAAGTCGGATTTTGAATATGATTCGACAAAAAAGCAAAGAGAATACCGATTTTGAGGCAGAATGTTGCATAGTGTTAGATGGAATGGAGTTGCAAGGGGAACGTGCAATATGGGCAGACTGTACCAGCTCTGTGGGCGCCGAGGGCTTTCTCCTGCAAGACCTTGGCAGCCTGGCCCAGTTCTGGGAGTGCTGTTCGTCCAGCTCTGGCGATGCCGACGGGGAGAGTTTTGCGGGAGACTCCCCGGTTCGACTCTCCCCGACCTTAGACAGCACAGCGCTCAATCCGCATTTGCTGGCCGGCAATCAAGAGCTCTTTTCAGATATTAATGAAGGATCTGGTATAAACTCCTGTTTTTCAGTGTTTGAAGTGCAATGCAGTAATTCTGTTTTACCATTTTCTTTTGAAACACTCAACTTGGGAAATGAAAATACAGATTCTAGTGCTAACATGCTTGGGAAAACACAGTCTAGATTACTAATATGGACCAAAAATAGTGCCTTCGAGGAAAATGAACACTGTTCTAATCTTTCAACGAGAACTTGCAGTCCGTGGTCCCATTCAGAAGAAACACGTTCAGACAATGAGACGTTAAGCGTCCAGTTTGAAGAGTCCACACAGTTTAACGCAGAGGATATTAACTATGTAGTTCCTAGAGTCTCGTCCAATTATGTAGATGAAGAACTCCTAGATTTTTTGCAGGATGAAACTTGCCAGCAAAACAGTAGGACTTTAGGAGAAATCCCAACGTTAGTTTTCCAAAAAAAATCTAAACTAGAATCTATCTGTGGTATTCAGCTAGAACAAAAAGCAGAGAACAAAGCCTTCGAGACGACGCAAGCGTGTAGTGAAGGCAGTCCGCGTGGAGATGGCTACAGCTCAGGGGTTATTAAAGACATTTGGACAAAGATGGCAGACAGAAATTCTGCAGCTCCACTAGAAATAGAAAGCGTTGACGATGAGTTGTTTCCGACAGATGTAAATAACTACTGCTGCTGTTTGGATGCTGAGGCTCCAATGGAGCCCCTCCAGGAGCCAAACAAGGCCGTGCAGAGATCAGAATACCACCTGTGGGAGGGCCAGAAAGAGACCCTGGAGAAGAGAGCCTTTGTGTCCGGCGAGCTGTCCAAGGTGGATGGCGGGGACTACACCACCCCGTCGAAACCCTGGGATGTGACCCAAGACAAAGGGAGCTCATTCATCCTGGGAGGGGTTTACGGGGAGCTCAGAACGCTCAACAGCGATGCAGGGTGGGCGGTCGTACCGCCCAGTCACGCCAAAGGGAGTTTGCTGCAGTGTGCCGCTTCTGACGTGGTGACCATAGCGGGCACAGATGTCTTTATGACCCCCGGAAACAGCTTCGCTCCTGGTCACAGGCAGTTATGGAAGCCCTTTGTGTCCTTGGAACAGAACGACCAGCCGAAGAGCGGGGAAAACGGATTGAATAAGGGATTTTCCTTCATCTTCCATGAAGACTTACTAGGAGCTTGTGGCAACTTTCAAGTTGAAGATCCTGGACTCGAGTATCCCTTCTCTTCTTTTGACTTAAGCAATCCGTTTTCACAAGTTCTCCACGTAGAGTGTTCCTTTGAACCCGAAGGGATTGCATCTTTCAGTCCAAGCTTCAAACCGAAGTCAATCCTCTGCTCTGATTCCGACAGTGAAGTTTTCCACCCCAGGATATGCGACGTCGACAGAACACAGTACCGGGCTATCCGGATCTCCCCCAGGACTCACTTTCGCCCCATCTCTGCATCTGAACTCTCCCCCGGAGGAGGAAGTGAGTCAGAATTTGAATCCGAGAGAGACGAAGCAAATGTTCCCATTCCTTCTCAAGTCGACGCATTCGAAGATCCACAGGCAGATCTCAAACCGCTTGAAGAGGACGCAGAGAAAGAAGGCCATTACTATGGGAAGTCCGAGCTTGAGTCTGGGAAGTTCCTCCCCAGGTTAAAGAAGTCTGGGATGGAGAAGAGTGCCCAGACATCCCTGGATTCCCAGGAGGAGTCGGCCGGGGTCCTGCCAGCAGGAGAGCGGAACCCGTGTCTGGAGTGCAGCATGAGCGAGCCTCTGGAGATCGACCTGGAAAGCCCAGAAGCAAACTGTAAAATAATGGCACAGTGCGAGGAAGAAATTAATCATTTCTGCAGCTGCAAAGCAGGTTGTCAGTTCCCTGCTTATGAAGATAATCCAGTTTCTTCAGGACAGCTGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019427:ENSBTAT00000025878:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.370
Domain overlap (PFAM):
C1:
PF153761=DUF4603=FE(2.1=100),PF144001=Transglut_i_TM=PD(10.9=35.7)
A:
NA
C2:
PF153761=DUF4603=FE(85.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]