RnoINT0083289 @ rn6
Intron Retention
Gene
ENSRNOG00000027623 | LOC680039
Description
hypothetical protein LOC680039 [Source:RGD Symbol;Acc:1596848]
Coordinates
chr14:79307829-79313144:+
Coord C1 exon
chr14:79307829-79307910
Coord A exon
chr14:79307911-79309846
Coord C2 exon
chr14:79309847-79313144
Length
1936 bp
Sequences
Splice sites
5' ss Seq
AATGTATGT
5' ss Score
5.87
3' ss Seq
ACTCTTCCTCTGTTTTGCAGGTA
3' ss Score
11.6
Exon sequences
Seq C1 exon
AAGAGAAGATTCACAAAAAGTTAGAGGGTTCTCCTTCTCCAGAGGCAGAATTGTCCCCTACAGCAAAGGATCAAGTGGAAAT
Seq A exon
GTATGTAAGACTGTGCTTAGTATGAAGTATGCATTGTTAGAACTAGTCTCTTTACTGCCACATGGTTTCCATTTCTGTCACCTGTATGATGTCTTACTGAAGAAAACACATGCATACTTAGGTGTTTCATTTATAGTGAGAGTGAAAAAGTGAGTAAAATGGTCTAATTGTTTAATGTGTCTACAGTCAGTGTTTGTGAAGGAAGCAGGACAGCTGCTGTTTACTGAGCACTGGCAGCATGTTAGAAACTGACAGTCTTTGAGACCGAGGTGAGAGGTCATCCCGTACACAGAGAGCTGGGTTTACATTATCCCACAGAGGACCTGACCAGACCTGTTCCCTGTATCTTTAGTTCTTCTGTTGTGAGCGATTGATATTAAAATCATCTGTACTATAAACAGACTTCCTTGCTATACATTCTATTTTAATCTTCTGAATCTCTAATGAAGAAAAAAGTTGCATTCATTTGGTTATATTAAAAGTGACGTTCTCAGAGATTAGGAACAAAATAAAAAAAGTACAAAACAGTGCATTAATAGTTTAATATCAATTACATGCGGAAGTGATAATGTAATTCTGATGTTTATTAGAATTAATTATCAGAATTAATTTCACCAGTTTCTTCTTAAACTTCTAATATCACTGCTAGGATGTTGAAAATTATGAATGGGATTAGAGAGATGATTCAGCAGTTACGAGCACTTGCTGCTCTTCAGAGGATCTGAGTTCAGTTCCCAGCACCCGTGTCAAGTGACTCACAACCACTTGTCACTCCAGCTCCAGGGAATCCATTGTTTATTTTTCTGGCCTTCTTGGCTAATCTCACATACAGGCAACATGTGTANNNNNNNNNNNNNNANNNNNNNNNNNNNNANNNNNNCGAATAAAATTAATTTTTAAAGAGAAAATAATCTATAAAGCTTGTAATAATTTGTACTATACAGCTTTAATACGCAGTCACATTCACCACCTTTGTAAACATGGCCTTTGCCACTTAGTGTGTGGCCTTGGTGTTGTGTCCAGATGAGCAATGCCCTCAAGAGGCAGCCTAGCTTTAAACATCCTTTGGGGATCTAGTCTGCTCTCACATCTCCAACGATTGCTAGTTTTTCTAGCAAGTCTTTCTGTGGTCTTCTAAGCATGTTTAGGGGATTATGGTCCAATCAGGCTTTCATCCTGGAGCACAGCTTGTGTAGGTCTCACCCCTCACAGTTCACTAAACCCAGCAGCCTCACTCATGACCAACAGAGTAAAGGATCCCTACTGTTGCTGAGTGCCTGCAAAATTGCCCAGCTCCATGCTGTTGCCCTGATAATATAGCAGGAGTGAGGACAGAATGAGTGATGGTCCGACTCATTCCTCCTGCGTTAGAGCCAAGCTCGATTGTGTACGGCCTGAGGGTGTAGAAAGTAAGCAGCAGAGCAGGCTCCATGTGGAAATGGCTGCAGAGTTGTAGTCCTGAGTCACCTGCTCAGTTGCTCTCAGTGCCACTTCTTTCCACTCTTAACCTGCTCACTGTCTTAGAGGGAGGAAGAAGACTAAAATATCAAATAGTGAGCTTAAGGTCATAAGCATTGTAAGTGACCAAGATCAGAGTCAAGTTCAGACATTTCCTACTACCTTCCTGTTACCTTGTTTTTGTCATTTGTTCCAAGATGAAATTGAAGCTTTGATGACAAATCTTACATATTTTCACAGTATTTGCATAGTGCCTCTCACGGTCCAAGCAGTGCTAAAGTGCTTGGTGTCGGGAACTAATTGTAATGCACAGCACAGTTTCCTGTTTGGTAATTCATTTCAAATTATCACTTTCTTGATGGTGTGAATGCTGACACTAGTGATCTGAAGTGCCGTCTCTCAGGTTAGCATTGCTGCCTCTGTGTAGATGGTGACTGTCAAATGTGGCTTGCTCTTGAACTCTTCCTCTGTTTTGCAG
Seq C2 exon
GTACTATGAAGCATTTCCACCACTTTCTGAGAAGCCAGTTTGCCTGCAAGAGATCATGACCGTGTGGAACAAGTCCAAACCCTGTTCTTACTCTAGCTCCTCTTCATCATCCACAGTCCCACCAGCAAGCACAGATCCATCTTCTCCAAAAGACTGCAACAGTGAGAGCGAAGCCGTCAGAGAGAGAAGCAGTGCCGCCTCCATCCTCACACACGAGAAAGCCCAGAGCAGAAGCAGACACGAGGAGAACAAGTTGAGCCACAGCACCATCGAAGAAAAGCCTGCCTTGTACAAAAAGCAGATCCGACACAAACCTGAAGGGAAGATTCGCCCTCGCTCATGGTCATCTGGCTCTAGTGAAGCAGGCTCAAGTTCAAGTGGTAATCAGGGAGAATTAAAAGCATCCATGAAGTATGTTAAAGTCAGACACAAGGCACGAGAAATTCGAAACAAAAAAGGGCGGAATGGGCAAAGCAGGCAGTCACTGAAGCATTGCGGGAAGGCAGAGAGAGGAGTCCATGCAGGCAGCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCAATGGGTCCATCAGGCAGCTGTGCAAGCGGGGTAAGAGACCAGCAAAGGAGACAGGAAGGAGCGACTCTGGGAACACTGCAGTGAAAGACCTGTATGTGGAGAGCAGGAGCAACAAAGAGTACAAGGAGGAGCCACTGTGGTACACAGAGCCCATTGCTGAGTATTTTGTTCCTTTGAGTAGAAAAAGCAAGCTAGAGACCACATACCGGAACAGGGAAGACACAAGTGCTCTGACAGCAGAGGCTGTGGAAGACTTGTCTGACTCTGTGCGTGGTCTGTGTATCAGCAACAGTAATATCCATAGAACATACCTCGCAGCAGGCACTTTCATTGATGGTCATTTTGTAGAAATGCCTGCAGTTATAAACGAGGATATTGACCTCGCTGGGACCTCATTATGTTCTCTACCAGAGGACAATAAATATCTGGATGATATTCATCTATCAGAACTAACACACTTCTATGAAGTGGATATTGATCAATCCATGTTGGATCCTGGTGCCTCAGAAACAATGCAAGGAGAAAGTCGGATTTTGAATATGATTCGACAAAAAAGCAAGGAGAATACAGATTTTGAGGCAGAATGTTGCATAGTGTTAGATGGTATGGAGTTGCAAGGGGAACGTGCAATATGGACAGATTCTACCAGCCCTGTGGGTGCTGAGGGCTTCTTCCTGCAAGACCTTGGCAATCTGGCTCAGTTTTGGGAGTGTTGTTCATCTAGTTCTGGTGATGCTGATGGAGAGAGTTTTGGAGGAGACTCTCCAGTTAGACTCTCTCCTATCTTGGACAGCACGATACTCAGTTCACACATGCTTGCTGGCAATCAAGAGCCCTTTTCCAATATTAATGAAGGATCTGGTATAAACTCTTGTTTTTCAGTATTTGAAGTGCAATGCAGTAACTCTGTTTTACCATTTTCTTTTGAAACACTCAACTTGGGAAGTGAACATACAGATTCTAGTGCTAATATGCTGGGGAAAACACAGTCTAGATTGCTAATATGGACCAAAAATAGTGCCTTTGAAGAAAACGAACACTGTTCTAATCTTTCAACAAGAACTTGTAGTCCATGGTCCCATTCAGAAGAAGCTCGCTCGGACAACGAGACGCTAAACCTTCAGTTTGAAGAATCGACACAGTTTACTGCAGAAGATATTAATTATGTGGTTCCCAGAGTCTCGTCAGATTTTGTAGATGAAGAACTTCTAGATTTTTTGCAGGATGAAACTTGCCAGCAAAACAGTAGAACTTTAGGAGAAATTCCTACATTAGTTTTCAAAAAAAGATCGAAGCTAGAATCTGTGTGTGGTATTCAGCTAGAACAAAAGGCAGAAAGCAAGAACTTTGAAACTACACAAGCATGTGGTGAAAGCAGTCCACATGGAGATGGCTACAGCTCAGGGGTTATTAAAGACATTTGGACAAAGATGGTGGGTAGGAGTTCTGTGGCTGCAGCAGAGACAGAGCGAGCTGGGGAGGAGTTGTTTTCCACAGACGTAAGTAACTACTGCTGCTGTTTGGACACGGAGGCGAAGATGGAAACCCTTCAGGAGCCCAGTAGGGCTGTGCAGAGATCAGAGTATCATCTCTGGGAGGGACAGAAGGAGAATGTGGAGAAAAGAGCATTTGTCTCTAGTGAGCTGTCCAAGGTGGATGGTGGTGACTACACCACACCCTCTAAACCTTGGGATGTAGCCCAAGATAAAGAGAACACATTCATTCTTGGAGGAGTTTATGGAGAGCTCAAAACGTTCAACAGCGATGGGGAGTGGGCAGTTGTACCACCTGGTCACACAAAAGGGAGCTTGCTACAGTGTGCAGCCTCTGATGTGGTGACAATCGCTGGTACAGATGTCTTTATGACCCCTGGAAACAGCTTTGCTCCTGGTCACAGGCAGCTCTGGAAGCCCTTTGTGTCATTTGAACAGAATGACATGCCGAAGAGCGGGGAAAATGGATTAAACAAGGGGTTTTCTTTTATCTTCCATGAAGACTTGCTAGGAGCCTGCAGTAACTTTCAAGTTGAAGATCCTGGGCTTGAATACTCATTCTCTTCCTTCGACCTAAGCAATCCCTTCTCACAAGTTCTCCATGTAGAGTGCTCATTTGAACCAGAAGGGATTGCGTCTTTTAGCCCTAGTTTCAAGCCGAAATCAATCCTCTGCTCTGATTCAGACAGTGAGGTTTTTCACCCCAGAATATGTGGTGTCGACAGGACACAGTACAGGGCTATTCGAATCTCTCCTCGGACTCACTTTCGCCCAATTTCTGCATCTGAACTCTCCCCTGCAGGAGGAAGTGAGTCAGAATTCGAATCTGAAAAAGATGAAGCAAATATTCCCATTCCTTCTCAAGTTGATGTATTTGAAGACCCACAAGCAGATCTCAAACCTTTAGAAGAAGATGCAGAGAAAGAAGGTCACTACTATGGAAAGTTAGAGCTCGAGTCTGGGAAGTTCCTTCCTAGGTTAAAAAAATCTGGAATGGAGAAGAGTGCTCAGACATCACTGGATTCCCAGGAGGAGGCAGCAGGGATCCTGCCAGTGGGAAAACAAAGTCAGTGTTTGGAATGTAACTTTAATGAATCTCTGGGAATAAACTTAGAGAGCTCCACAGCAAACTGTAAAATAATGACACAATGTGAAGAGGAAATGAATGGTTTTTGCAGTTGCAAAGCAGGTTGTCAGTTCCCTGCTTGTGAAGATAATCCAGTTTCTTCAGGACAATTGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027623:ENSRNOT00000029191:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=NA C2=0.311
Domain overlap (PFAM):
C1:
PF153761=DUF4603=FE(2.2=100),PF144001=Transglut_i_TM=PD(10.9=35.7)
A:
NA
C2:
PF153761=DUF4603=FE(85.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCTCCTTCTCCAGAGGCA
R:
AGGCAGGCTTTTCTTCGATGG
Band lengths:
343-2279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]