HsaINT0085670 @ hg19
Intron Retention
Gene
ENSG00000170871 | KIAA0232
Description
KIAA0232 [Source:HGNC Symbol;Acc:28992]
Coordinates
chr4:6860152-6865910:+
Coord C1 exon
chr4:6860152-6860233
Coord A exon
chr4:6860234-6862627
Coord C2 exon
chr4:6862628-6865910
Length
2394 bp
Sequences
Splice sites
5' ss Seq
AATGTATGT
5' ss Score
5.87
3' ss Seq
GTCTTTACTCTGTTTTTCAGGTA
3' ss Score
11.38
Exon sequences
Seq C1 exon
AAGAGAAGATTCACAAAAAGTTAGAGGGGTCTCCCTCTCCAGAGGCAGAATTATCCCCTCCAGCAAAGGATCAAGTGGAAAT
Seq A exon
GTATGTAAGATTGTATTCGGTAATAAAGTGTGCATTTGTTAAAATCAGATGAATAACTGCTACATGGTTTCCGTTTTCTGTTTGTCATCTTGTTTAGTTTCATTATATATAATGTAAGAAACATTTATCGAGCGCTTATATGCTTGACACTGAGAATTCAAAGGTGAAACAAGATGGTTCTGTCCTTGGTGTTCATATTCAATATTTGTGGAACAAATGAGTGAAACATAGAAGGTTATTATTTGCTAAGTCTATGTATGTACTATTACCTTTAATATTCACAACAGCCCTTTGAGACAGCTGTGAGAAATTAGGATTATCAGCCGGGCACAGTGGCTCATGTCAGTAATCCCAGCACTTTGGGAAGCCAAGGCAGGTGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGTCAACATGGTGAAACCCAGTCTCAAATATTAGTTGAGCATGGTGGTACATGCCTGTAATCCCAGCTACTCAGGAGACCGAGGCAGGAGAATTTCTGGAACCCGGGAGGCAGAGGTTGCAGTGAGCTGAGACTGTGCCATTGCACTCCAGCCTGGACGACAGAGCGAGACTCTGTCTTATTAAAAAAAAAAAAAAAAAAAAAAACAAGAAAGAAAAGAAATGATTATCCATGTTCACAAGCAAGAACACTGAGTTCCCACTGTTTACTGCAGAGGGAACATAGGCAATCCTTGACCTGCCAAACCTGCTTCCTAAAGATACTTTTATTTTTTTGTTCGTAAATAGTCTTAAAATAATCTGCATTATAAACAGACTTCCCTATTATACATTTTATTTTAATCTTTCGAACCTCTGAAACCTAAGAAAAAAATAGCATTTCCTTGGTTTGTATAGACCTGTATTATCCAGCACAGAAGCTGTAAGCCATGTGTGACTACTGAGCACTTGAAATGGGGCTGGTTCAAACCGTGATGTGCTGTCAGTGGACAATTCTCATTGGATTTCAAAGACTATATATAAAAAAAAGTAAAGTATTAAACATTTTAAAGTATTGATTACATGTTGAAATGATAATATCAGGAGTTTAGTTAAATATATTACTGGAGTGCATTTCACCTATTTCTTATGTTTTTAATGTGCCTACTAGAACACTTAAAATTACATATGAAGCTCAAAATATATTTCTGTTGGTCAACTCTGACATAGACTGAGAAAGAGAATCAAGTTCAGGCCCTTTGAAAACATGGCCTTTTACCACTTCATGTGTGACCTTGAGCATTGCCTCTGAAACAACAGTCCCCAGTAGCCAATGTGACTTTAAATTCTGCCCTTTGCAATCTGTTCTGCTCTGAAATCTTCAGTGGCCCCCAGTTTCCTAGCAAATCAAAAATACTTTCTCATTTTCAAGCCCCCTGAAACCAGCCTCCCTGGCTTTTTCTACGCTGCATTTCTGGTGATCACAGCTCTAGTTAGTTTTCCATTCTGTGAGCATAACATGTGTGTCTTGGTGTCCTCACACAGGCTCTCAGGCCTCACAGGTAGTACTCACTAAACTTGTGGAATAAATCTGGAATTTCAAGGCTCAGTTGTGGCCCACTTTAATTGTTGTAGGCCTCACCGACATCCTCTTTCTGAATACTTGAATGTGATCATTCCTACCCTTTCTGAGGGCCTGCTTCAATGCCAGGCAGTATGCTAGCAGTTACGTAAGAAGCTGCTGTTCCAACTCATTTTGCATATTAATTCCTTTACTCCTCACAACCCTGAGAGGTAAATATTACTAGCTCTATTTTGTAGGTGAGGAAACTGAGCTATGGAGAGGTTAAGTAACATGCCTAAGGTCACACAGCTAGTAAAGCAGGCAGAGCCAGGATTTGACCTCAGAGAATGTGGCTTCAGAGCTCATACTCTTGACTGATTGCTACCGAGCTTTTTAACCGCATATATTTTCAACGCTCACAATAACTTTGGGAGGTAAGTCATAGGATCACCATTTTGCAGTTGAGGAAATAGTCTGAAGCAGTAAATAATGAGCTTAAAGTCGCAAGCAATAGTGACTTAGCTGAGATTCAAATTCAGATAATGCTTACTGAAGAGACTGCATTCTTTCTTCTACTATTTGTCCTTTTTGACTTCTTAATTAAAATGCAAACTTTGAAGATAAAAACTGTCATCTTACATATTTTCTCAGTAATCTTACAGTGCGTATCACAGTGCTGAGCAAAATGGTGCTTGATGCATGGGACTAATCTTAAGCATATTTTACTGTATTATAAATTATTGTAAAGTTAATGATTCTTGGATGATGTGAATGTTGACACTACTAAAATGAAATATTCCATTCTTCTGGTTGGTAATGTTGTTTTACTGTATCTAAAAAATCTGCATACTCGTGTTTTGAAGTCTTTACTCTGTTTTTCAG
Seq C2 exon
GTACTATGAAGCATTTCCACCACTTTCTGAGAAACCAGTTTGCCTGCAAGAAATCATGACTGTGTGGAACAAGTCTAAAGTCTGTTCTTACTCTAGCTCTTCTTCATCATCCACAGCCCCACCAGCTAGCACAGATACTTCCTCTCCTAAGGACTGCAACAGTGAAAGTGAAGTCACCAAGGAAAGAAGCAGTGAAGTACCCACCACTGTGCATGAGAAAACCCAGAGCAAAAGCAAAAACGAGAAGGAAAACAAATTTAGTAATGGCACAATTGAAGAAAAGCCTGCTTTGTACAAAAAGCAAATCCGACATAAACCTGAAGGAAAGATTCGCCCTCGCTCGTGGTCTTCTGGCTCCAGTGAAGCAGGCTCAAGTTCCAGTGGGAATCAGGGAGAATTAAAAGCATCCATGAAGTATGTTAAAGTAAGACACAAGGCACGAGAGATTCGAAACAAAAAAGGGCGGAATGGGCAAAGCAGGCTTTCTTTGAAGCACGGTGAAAAGGCTGAAAGGAACATTCATACTGGAAGTAGTAGCAGTAGCAGCAGTGGTTCTGTCAAACAGCTGTGCAAGCGGGGTAAGAGACCTTTAAAAGAAATAGGGAGAAAAGATCCTGGGAGCACTGAAGGAAAAGACCTGTACATGGAGAATAGAAAGGACACAGAGTATAAAGAGGAGCCCTTGTGGTACACCGAGCCAATTGCTGAATATTTTGTTCCTCTGAGCAGAAAAAGTAAACTAGAGACCACATACCGAAACAGACAGGATACAAGTGATCTGACATCAGAGGCAGTGGAAGAATTGTCTGAATCAGTGCATGGTCTTTGTATCAGCAACAATAATCTTCATAAAACATACCTCGCAGCAGGTACTTTCATTGATGGTCATTTTGTAGAAATGCCTGCAGTTATAAATGAGGATATTGACCTCACTGGGACCTCATTATGTTCTCTACCAGAGGACAATAAATACCTGGATGATATTCATCTATCAGAATTAACGCACTTCTATGAAGTGGATATTGATCAATCCATGTTGGATCCTGGTGCCTCAGAAACAATGCAAGGAGAAAGTCGGATTTTGAATATGATTCGACAGAAAAGCAAAGAGAACACAGATTTTGAGGCAGAATGTTGCATAGTGTTAGATGGTATGGAGTTGCAAGGGGAACGTGCAATATGGACAGATTCTACCAGCTCCGTAGGTGCTGAGGGCTTATTCCTGCAGGACCTTGGCAATCTGGCTCAGTTTTGGGAGTGCTGTTCATCCAGCTCCGGTGATGCTGATGGGGAGAGTTTTGGAGGAGACTCTCCAGTTAGACTCTCTCCCATCTTAGACAGCACAGTGCTCAATTCACACCTGCTTGCTGGCAATCAAGAGCTCTTTTCAGATATTAATGAAGGATCTGGTATAAACTCTTGTTTTTCAGTGTTTGAAGTGCAATGCAGTAATTCTGTTTTACCATTTTCTTTTGAAACACTCAACTTGGGAAATGAAAATACAGATTCTAGTGCTAATATGCTTGGGAAAACACAGTCTAGATTGCTAATATGGACCAAAAATAGTGCCTTTGAAGAAAATGAACACTGTTCTAATCTTTCAACAAGAACTTGTAGTCCATGGTCCCATTCAGAAGAAACACGTTCAGACAATGAAACATTAAATATTCAGTTTGAAGAATCCACACAGTTTAATGCCGAAGATATTAATTATGTAGTTCCTAGAGTCTCGTCAAATTATGTAGATGAAGAACTTCTAGATTTTTTGCAAGATGAAACTTGCCAGCAAAACAGTAGAACTTTAGGTGAGATTCCTACATTAGTTTTCAAAAAAACATCTAAACTAGAATCCGTCTGTGGTATTCAGCTAGAACAAAAAACAGAAAACAAAAATTTTGAAACTACACAAGTATGTAATGAAAGTCCACATGGAGATGGCTACAGCTCAGGGGTTATTAAAGACATTTGGACAAAGATGGCAGACACAAATTCTGTGGCTACAGTAGAAATAGAAAGAACTGATGCTGAGTTGTTTTCGGCAGATGTAAATAACTACTGCTGCTGTCTAGATGCTGAAGCTGAACTGGAGACCCTTCAGGAGCCTGATAAGGCTGTGCGGAGGTCAGAGTACCATCTGTGGGAGGGACAGAAAGAGAGCCTGGAGAAAAGAGCATTTGCTTCTAGTGAGCTATCAAACGTGGATGGTGGTGATTATACAACACCCTCTAAACCCTGGGATGTAGCCCAAGATAAAGAAAACACATTCATTCTTGGAGGAGTTTATGGAGAACTCAAAACCTTCAATAGTGATGGGGAGTGGGCAGTCGTACCACCTAGTCACACAAAAGGAAGTCTGTTACAGTGTGCAGCTTCTGATGTTGTGACGATAGCTGGTACAGATGTCTTTATGACCCCAGGAAACAGTTTTGCTCCTGGGCACAGGCAGTTATGGAAACCCTTCGTGTCATTTGAACAGAATGATCAGCCGAAGAGTGGGGAAAATGGGTTAAATAAGGGATTTTCTTTTATCTTCCATGAAGACTTACTAGGAGCTTGTGGCAACTTTCAAGTCGAAGATCCTGGACTTGAATACTCATTTTCTTCCTTTGACTTAAGCAATCCATTTTCACAAGTTCTTCATGTAGAATGCTCATTTGAACCTGAAGGGATTGCATCTTTCAGCCCCAGTTTTAAACCGAAATCAATCCTCTGTTCTGATTCAGACAGTGAAGTGTTTCACCCCAGGATATGTGGTGTTGACAGAACACAATACAGGGCTATTCGGATCTCTCCTCGGACTCACTTTCGCCCAATTTCTGCATCCGAACTGTCCCCAGGAGGAGGAAGCGAGTCAGAATTTGAATCTGAGAAAGATGAAGCAAATATTCCCATTCCTTCTCAAGTTGATATATTTGAAGATCCGCAGGCAGATCTCAAACCTTTGGAAGAAGATGCAGAGAAAGAAGGCCATTACTATGGAAAATCAGAGCTTGAGTCTGGAAAATTCCTTCCCAGGTTAAAAAAATCTGGGATGGAAAAGAGTGCTCAGACATCACTGGATTCCCAGGAGGAATCAACTGGGATTCTTTCAGTAGGAAAGCAAAATCAGTGTTTGGAATGTAGCATGAATGAATCCCTGGAAATAGATTTAGAAAGCTCAGAAGCAAATTGTAAAATAATGGCACAATGCGAGGAAGAAATTAATAATTTTTGTGGTTGCAAAGCAGGTTGTCAGTTTCCTGCTTATGAAGATAATCCAGTTTCTTCGGGACAGCTGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170871-KIAA0232:NM_001100590:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.327
Domain overlap (PFAM):
C1:
PF153761=DUF4603=FE(2.1=100),PF144001=Transglut_i_TM=PD(10.9=35.7)
A:
NA
C2:
PF153761=DUF4603=FE(85.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)