MmuINT0046098 @ mm9
Intron Retention
Gene
ENSMUSG00000029190 | D5Ertd579e
Description
DNA segment, Chr 5, ERATO Doi 579, expressed [Source:MGI Symbol;Acc:MGI:1261849]
Coordinates
chr5:36955895-36961473:-
Coord C1 exon
chr5:36961392-36961473
Coord A exon
chr5:36959184-36961391
Coord C2 exon
chr5:36955895-36959183
Length
2208 bp
Sequences
Splice sites
5' ss Seq
AATGTATGT
5' ss Score
5.87
3' ss Seq
ACTCTTGCTCTGTTTTGCAGGTA
3' ss Score
11.1
Exon sequences
Seq C1 exon
AAGAGAAGATTCACAAAAAGTTAGAAGGTTCTCCTTCTCCAGAGGAAGAATTGTCCCCTACAGCAAAAGATCAAGTGGAAAT
Seq A exon
GTATGTAAGACTCCTCAGTCTGAAGTATGTATTGTTAAAACCAGTCTCGCTACTGCCACATGGTTTCCATTTCTGTCATCTCTATGATTTCTTAATTTAGGAAATGCATGAATGCTTAGGTGCTTCATTCATAGTGAGAGTGCAAAAGTGAGTAAAACAGTCTGATTGCCTAATGTGTCTGCAGTCAGTGTTTGTGAATGAAGGAAACAGGATGGCTGCTGTTTCCTGAAGCACTTGCCGCGCATTCAGACTGACACAGAGTCTTTGAGGCAGCTGAGAGAGCTCATGACATTCCCTCTCCACAGACGAGAGCTGGTGTACCTTATCCCACAGAGGACCTGGCCAGACTTGGTCCCTGTGTCTTTAGTTCCTCCCTTGTGAGTGATTAATAGCACTGTCATCTCTACTATAAACAGACTTCCTTGCTAGACATTTTATTTTAATCTTTTGAATCTCTACCGAAGAAAAAAATTGCAGTCATTTGGTTCCATTGTAAGTGTGACATTCTCAGTAGAGATTAGGAACAGAATAAAAAATACAAAACAGTGCATTAATCAGTTTAATGTCAATTACATGTGGAAGTGATAATATAATACTAATAAGTTATTAGAATTAATTTCACCAGTTTCTTCTTAGACTTCTAATATGACTGCTAGATGTTGAAAATTGTGTATGGGATTAGAGAGATGATGCAGCAGTTAAGAGCACTTGCTGCTCTTCCAGTTCCCAGCCCTGTGTTAAGTGGCTCACAACCACTTGCCACTCCAGCTCCAGGGAATTCATTGCTTTCTTCTGGCCTTTTTGTCTAATCTCACACACAGGCAACATGCACTCTCTCTCACACACACACACACACACACACACACACACACACACACACAAATAAAAATAATTTTTTAAGAGAAAATTACCTATAAAGCTTTTAATAATTTGTACTATACATAGCTTTACTACAGATAGTCACAATGAATACCTTTGTAAACATAGCCCTTGCCACTTAGTGGGTGGCCTTAATGTCTGGAAGAGCAATACCCTAGAGGCAGCATAGCTTTCGACATCCTTTGGGGGATCTATTTTGCTCTCAAATCTTCAGCAATTGCTATTTTTTTCTAGCAAGTTTCTTTCTGTGGTATTCTAAGCATGTTTAGGGGTTATGGTCCAATCAGGCTTCCATCCTGGAGCATAGCATGTGTGTAGGTCTCACTTCTCACTGTTCACTAAACCCAGCTGTGATCCCTGACTCTGATTGCACCAGCATCCTCACTTAAGACCAATTGGATGTAACCATCCCACCATTCCTGAGCCTGCGTAAATGCCGAGTTCCATGCTGTTGCCCTGATAGTCTATCAGGAACAAGGGCATGGAGTGGGTGATGATCTGACTCGTTTCTTGTCCTTTACTCCTGCTTCTGAGGTGAACTCTTCTTGTTCCTGCTTGGAGCCACTGCAGGGTTATATAACGGCCTAGGGGAGCCTAGAAAGTAAGCAGGAGAGCAGGGCCAGACTTGGGGAAATGGCTATAGAGCTGTAGTCCCGAATCATCTGCTCAGTGACTTTCAGTAACACTTATTTCCACTATTCACTACTGTGAGGTTCTTATGTGTTCACTATTTTAGAGGGAGGAAAAAGACTCAAATATCAAATAGTGAGTTTAATGTCACAAGCATTGTAAGTGGCCAAGATGAAATTCAAGTTCAGACATGTCCTATTAGCCTAGTACATTCTTCCTATTACATTGTTTTGTCATTTCTTCCTAGATGAAATTGAAGCTTTGCTTTGATGACAGATCTTAGATATTTTTCATAGTATTTGCATAGTGCCTCTCACAGTCCAAGCAGTGCTAAAGTGCTTGGTCTGGGGGACTAATTTTTTTGTTGTTGTTGTTTTTTGAGACAGGGTTCCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCAGAGTGCTGGGATTAAAGGCGTGCACCACCACGCCCAGCTGGGGGACTAATTTTAATGCACAGCACTGTTTACTGTTTGGTAATTCGTTTCAAATTCTTGCTTCCTTGATGGTGTGATTGCTGACATTAGTGAGCTAAGGCACTGCCTCTCAGGCTGACGTTGCTGTCTGTGTAATGGTGACTGTAAAGTGTGCCTTGCTTATGAACTCTTGCTCTGTTTTGCAG
Seq C2 exon
GTACTATGAAGCATTTCCACCACTGTCTGAGAAACCGGTTTGCCTGCAAGAGATCATGACCGTGTGGAACAAGTCCAAACCCTGTTCTTACTCTAGCTCCTCGTCATCATCCACAGTCCCACCAGCAAGCACGGATACATCTTCTCCAAAGGACTGCAACAGTGAGAGTGAAGCCGTCAGAGAGAGAAGCAGTGTCGCCTCTGTCCCCATGCATGAGAAAGCCCAGAGCAGGAGCAGACACGAGAAGGAGAGCAAGCTGAGCAGTAGCACCATCGAAGAAAAGCCTGCCTTTTACAAAAGGCAGATCCGACACAAACCTGAAGGGAAGACGCGCCCTCGCTCATGGTCATCTGGCTCTAGTGAAGCAGGTTCAAGTTCAAGTGGTAACCAAGGAGAGTTAAAAGCATCCATGAAGTATGTTAAAGTCAGACACAAGGCACGAGAAATTCGAAACAGAAAAGGGCGGAATGGGCAAAACAGGCATTCACTGAAGCATTGTGGAAAGGCAGAGAGAGGAGTCCATGCAGGCAGTGGTGGCAGCAGCAGCAGCAGCAGCAATGGGTCCATCAGGCAGCTGTGCAAGCGGGGTAAAAGACCAGCAAAGGAGACGGGAAGGAGCGACTCTGGGAACACTGCAGTGAAAGACCTGTATGTGGACAGCAGAAACAACAAAGAGTACAAGGAAGAGCCCCTGTGGTACACAGAGCCCATTGCTGAGTATTTTGTTCCTTTGAGTAGAAAAAGCAAACTAGAGACCACATACCGAAACAGGGAAGATACAAGTACTCTGACAGCAGAGGCAGTGGAAGACTTGTCTGACTCTGTGCGTGGTCTGTGTATCAGTAACAGTAATATCCACAGAACATACCTCGCAGCAGGTACTTTCATTGATGGTCATTTTGTAGAAATGCCTGCAGTTATAAACGAGGATATTGACCTCGCTGGGACCTCATTATGTTCTCTACCAGAGGACAATAAGTATCTGGATGATATTCATCTATCAGAACTAACACACTTCTATGAAGTGGATATTGATCAATCCATGTTGGATCCTGGTGCCTCAGAAACAATGCAAGGAGAAAGTCGGATTTTGAATATGATTCGACAAAAAAGCAAGGAGAATACAGATTTTGAGGCAGAATGTTGCATAGTGTTAGATGGTATGGAGTTGCAAGGGGAACGTGCAATATGGACAGATTCTACCAGCTCTGTGGGTGCTGAGGGCTTCTTCCTGCAAGACCTTGGCAATCTGGCTCAGTTTTGGGAGTGTTGTTCATCTAGTTCTGGTGATGCTGATGGAGAGAGTTTTGGAGGAGACTCTCCAGTTAGACTCTCTCCTATCTTGGACAGCACGATGCTCAGTTCACACATACTTGCTGGCAATCAAGAGCCCTTTTCCAATATTAATGAAGGATCTGGTATAAACTCTTGTTTTTCAGTATTTGAAGTGCAATGCAGTAATTCTGTTTTACCATTTTCTTTTGAAACACTCAACTTGGGAAGTGAACATGCAGATTCTAGTGCTAATATGCTGGGGAAAACACAGTCTAGATTGCTCATATGGACCAAAAATAGTGCCTTTGAAGAAAACGAACACTGTTCTAATCTTTCAACAAGAACTTGTAGTCCGTGGTCCCATTCGGAAGAAGCACGCTCAGACAATGAGACACTAAACATTCAGTTTGAAGAATCGACACAGTTTACTGCAGAAGATATTAATTATGTGGTTCCCAGAGTCTCGTCAGATTTTGTAGATGAAGAGCTTCTAGATTTTTTGCAGGATGAAACTTGCCAGCAAAACAGTAGAACTTTAGGAGAAATTCCTACATTAGTTTTCAAAAAACGATCTAAGCTAGAATCTGTGTGTGGTATTCAGCTAGAACAAAAGGCAGAAAGCAAGAACTTTGAAACTACACATGCATGTAGTGAAAGCAGTCCACATGGAGATGGCTACAGCTCAGGGGTTATTAAAGACATTTGGACAAAGATGGTAGGTAGGAGTTCTGTGGCTGCAGTAGAGACAGAAAGAACTGGGGAGGAATTGTTTTCCACAGATGTAAATAACTACTGCTGCTGTTTGGATACTGAGGCGAAGATGGAAGCCCTTCAAGAGCCTAGTAGGGCTGTGCAGAGATCAGAGTATCATCTCTGGGAGGGACAGAAGGAGAACATGGAGAAGAGAGCATTTGTCTCTAGTGAGCTGTCCAAGGTGGATGGTGGCGATTACACCACACCCTCTAAACCTTGGGATGTGGCCCAAGATAAGGAGAACACATTCATTCTTGGAGGAGTTTATGGAGAGCTCAAAACATTCAACAGTGATGGGGAGTGGGCAGTTGTACCACCTGGTCACACAAAAGGGAGCTTGCTACAGTGTGCAGCCTCTGATGTGGTGACAATCGCCGGTACAGATGTCTTTATGACCCCTGGAAACAGCTTTGCTCCTGGTCACAGGCAGCTCTGGAAGCCCTTTGTGTCATTTGAACAGAGTGACATGCCGAAGAGCGGGGAAAATGGAGTAAACAAGGGGTTTTCTTTTATCTTCCATGAAGACTTGCTAGGAGCCTGCAGTAACTTTCAAGTTGAAGATCCTGGCCTTGAATACTCACTCTCTTCCTTTGACCTAAGCAACCCCTTCTCACAAGTTCTCCACGTAGAGTGTTCATTTGAACCAGAAGGGATTGCATCTTTTAGCCCCAGTTTCAAGCCGAAATCAATCCTCTGCTCTGATTCAGACAGTGAGGTTTTTCACCCCAGAATATGTGGTGTCGAAAGGACACAGTACAGGGCTATTCGAATCTCTCCCCGGACTCACTTTCGCCCGATTTCTGCATCTGAACTATCCCCTGGAGGAGGAAGTGAGTCAGAATTCGAATCTGAAAAAGATGAAGCGAGTGTTCCCATTCCTTCCCAAGTTGATGTATTTGAAGACCCACAAGCAGATCTCAAACCTTTAGAGGAAGATGCAGAGAAAGAAGGTCACTACTATGGAAAGTTAGAGCTTGAGTCTGGGAAGTTCCTGCCCAGGTTAAAAAAATCTGGAATGGAGAAGAGTGCTCAGACATCACTGGATTCCCAGGAGGAGGCAACTGGGATTCTGCCGAAACAAAATCAGTGTTTGGAATGTAACTTTAACGAATCTCTAGAAATTAATTTAGAAAGCTCAGCAGCAAACTGTAAAATAATGACACAATGTGAGGAAGAGATGAGTGAGTTTTGCAGTTGCAAAGCAGGTTGTCAGTTCCCTGCTTGTGAAGATAATCCAGTTTCTTCAGGACAATTGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029190-D5Ertd579e:NM_001081232:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.929 A=NA C2=0.317
Domain overlap (PFAM):
C1:
PF153761=DUF4603=FE(2.1=100)
A:
NA
C2:
PF153761=DUF4603=FE(85.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: