DreINT0179412 @ danRer10
Intron Retention
Gene
ENSDARG00000052244 | zgc:158564
Description
zgc:158564 [Source:ZFIN;Acc:ZDB-GENE-070112-1662]
Coordinates
chr7:39399327-39403110:+
Coord C1 exon
chr7:39399327-39399414
Coord A exon
chr7:39399415-39399791
Coord C2 exon
chr7:39399792-39403110
Length
377 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
TATATTATATCCTCCTTTAGGTA
3' ss Score
9.85
Exon sequences
Seq C1 exon
AAAAAGAAAAGCATGGAATTAAAAAATCTGATATCTCTCAGTCCCCTGAGCCAGATGAATCACTTTCTTCTAAGGATCAGGTTGAGAT
Seq A exon
GTAAGTAATTCAGGTTTACAGTCTGCAATGTGATTAATTATGTTGATACGACTGTTGTGATGTGGCTTATATTAAACCTGAAAAGGCTTGATTAAATGTATAGTCTATATTCTGCTTTCTTCGAAGTGAATGGGCTGTGGTTTGTTCTAAGAGCCTAACAGTGCACCCATGTTGCATAATAAATTTTCTTGGATATAGTAAAGATAATTACAAAATCAGTCTCAAACTAACTTTAGGATTACCCTCAGCTCTATGTTCAAATTCTTTTAGGTATTTAATTTGTTGTTGCTATTAATATTATTATTATTATTATTATTATTATTATTATTAACATTATTATTGTCATTATCATTATATTATATTATATCCTCCTTTAG
Seq C2 exon
GTACTATGAAGCTTTTCCACCCCTGTCAGAAAAACCTGTTTGTCTTCAGGAAATTATGACGGTGTGGAACACAGCTAAAGCCTGCACATATTCCAGCTCATCATCATCTGCTGTCCCTCAAACAAGCACAGACACATCCTCTCCAAAAGACTGCACCAGCGAGGGTGAAGCCTTTAAAGACCGAACAGTTGATGCACCCAGTTCCACCTCCACAACCAGCGAGAAGGCCCAGCAGCGACGCACTAAGAGGGAGAAGGAAAACAGATTCCATGGAAGCGCAACAGGAATGCCTGACGATCAGGTTGCTCCTCATAGCAAGAGGCAGGCCAGACACCGGTCAGAGGGGAGATTCCGTCCCCGATCATGGTCCTCTGGCTCCAGTGAGGCAGGCTCAAGCTCCAGTGGTAACCAGGGTGACCAGGCCCCTAGTTGCAAATCAGTCCGCATAAGACACAAGTCTCGTGAGGTCAGTGGCAGAAACAAAAAGGGCCGAAGTGGCGGTGGACAAGTCAAACTGGCCCTAAAAGTAATTGACAAAGAGGAACGGAAAAATGCACGAGGCAACATGAGTACCACTGGAGGCCCACCTAAGCAACAGCAGCACTACATGAAAAAAGGCAAGAGACCTCTGAGGGAGATCCGCAAAGATGCTAATCTGGTCGAGGCACAGGAGTCTGGAGGAGAGGCCAGTAAAAAGGAATATATGGAGGAGCCTCTTTGGTACACAGAGCCCATTGCTGAGTACTTTGTCCCTCTCAGTAGAAGTAAATTGGAGACAAAGTATCGGAGTAAAGAAGACTCTTCCAATGACCTAGCTATGTCCATTGACGTGGACTGTCTATCGGAGAGAATTCAAGGCATCTGCATTGCAAATTCTTGTTTTCAAAGGGCATATCTTGCAGCAGGAACTTTCGTGGATGGCCACTTCATTGAAATGCCTGGGGAAGGTGACGAAGAGGCTTCTGAACTAAATGGGATTCCAAGCTGCCCTCCTCCTGAAGATGGTCAAGATTTAGATGATGAGCATCTGTCTGAATTCACTCACTTCTATGAAGTTGATCTTTATCAATCCATATTGGATCCTAGTGCCTCAGATGCGGTACAAGAAAGTCGAATCCTGAGCATGATTCGGCAGAAGAGCGTTGAAAGAAAACACTTTGAAGCAGGATGTGTAGTTTTAGATGGCCTTGAGCTGCAAGGGGAAAGTGCAATAAGGGTTGATTCTCTGGGAGCCTCAGAAGCAGAAGTTTCTATAACACAAGATATGGAAAACATCGCCCAGGTCTGGGAGTGCTGTTCGTCGTCTAGCTTGGAAGATTTGGAAGGAGAAAGTTGTCCAGGTGATTCTCCAGGCAGGCTCTCCCCAGTGTTGGACAGTGTTCCATTTAATTTTAGCAAGCTGTCTGGAGCTTATGTAGGGTCTCGTCTCCAAGAGGCCAGTGGTAGCAGCTCTGCCCCAAACCCCTACTTCTCACTTTTTGAGGTGCAGTACGATAGCCCTACCTTTTCTTTTCCATGCGACTCACTCACAGGGGGTCAGGAAAATGTAGATTCAAGTAGCTGTTTAGATCCACAAGGTAACAAACAATCCCGTTTGCTAATTTGGACCAAAAACAGTGCCTTTGATGAAACAGAACACTGCTCTAACTTATCCACAAGGACCTGCAGTCCGTGGTCCCACTCAGAGGAGACACGGTCCGATAGTGAGCAGGTCAGTGCTCCAGCAGACGAATCAGCTCAGTTTGGCAATGAAGAGGTCAGCTGCATCTCCCTTATCCCACCTTTATGCCTAGAGGAGGAGCTTTTAGATTTCTTTCAAGAGAACTCTAGTCACCAGCAGGAAGAAACGAGTGTAAGCGCAGAGTCCAACCAACCCTTCAATAAGAAATCGAAATTGGAGTCTGTTTGTGGCATAGCACTAGAGCAAGATGAAAGTAAACTCTATAATGCTGTTGTGTTTTCAGATGTCCCAAATCAACAAAGTGATGAATACACCTCAGGGATAATAAAAGACATTTGGATGGCTATTGGAGATAGAGACTGTGTCCTAACACTCGGGGTAAAGAATACAGGGGAGCACTTGTTTTCAGAGGATTCTACCAGCTACCAATGCAGCTGTCTTGACAAGGATGCAAAAGGAGAAATTATTCAAAAGAAAGCTGTGCAGTGTTCGGAGTATCATCTTTGGGATGGGCAGAAAGAGAACGATGGACTTCCTAAAAACAAGCTAACTAAAATGAATGATGGGGATTATACTGCTCCGGCCAAGCCCTGGAATTGTAACTCACAGGAAAGCACCTCATTTATTCTGGGTGGGGTTTATGGAGAGCTGAAGACTCTAAGTGGCGACAGAGAATGGGCAATGATTCCACCTGGTGATGCTTGTGGCAGCTTGTTGCAGTGTGCAGCGGCCACATCTTCTGACATGGTAACCATTGCTGGAGCGGATGTGTTCATGAACACAAGCAGTTGCTTTGCTCCTGGCCACAAGCCACTGTGGAGACCTATTGTGTCCCTTGGTCAAAATGAGCAGGCAACCAAGGGAACAGGGGAAGGTTTGAATAAGGGATTTTCTGTTGTCTTCCATGAAGATTTACTGGGATCATGCGGAGGCTTCCGTGGAGAAGAGTCGGGACTGGATTATCCATTTTCATCCTTTGATTTGAACAACCCTTTTTCCCAAGTCCTGCATGTGGAGTGCTCATTTGAGCCAGAGGACATGGCCTCTTTCAGTCCGGGATTTAAGCCAAAATCCATATTATGCTCAGACAAGGAACCCTTTTGCCCTTGGTTATATGGCATCAACCGGACTCAGTATCGGGCCATTCGAATTTCCCCAAGGACTCATTTCCGGCCAATATCTGCCTCTGAACTGTCTCCAGGTGGGTGCAGCGAGTCAGATGTAGAGTCTGAGAAAGAGGAAGCAAGTATTCCAGTTGGTCAAGCAGACCTCTTTGATGACCCGCAGGCTGACCTTAAGCCTCTCGAGGAGGACGCAGAGTGTGAGGGCCCTTACTACGGGAAATCTGAATTGGAGTCTGGCAAGTTCCTACCCAGATTAAAGAAATCTGGCATGGAGAAGAGTGCCCAGACGTCTCTGGATTCGCAGGAGGGTGGGAGCACCCTTCTGCCAATTACTGAACAAGAGATTTGTGTACATTGTGAGGTGGCAGCGGATTCAGTGCCATGTTCTCATGTACAGTCTTCTGTTCTTCTACAAGAGGAGACTAGCGGAGAGACAGAGCCTTGCAATTGTGTTGCAACTGGTCAGATTCCTAAAAGTGGGAAGTCGCTGGATGTTGCTCAAGATATGCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052244:ENSDART00000146171:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.355
Domain overlap (PFAM):
C1:
PF153761=DUF4603=FE(2.2=100)
A:
NA
C2:
PF153761=DUF4603=FE(85.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCCCCTGAGCCAGATGAA
R:
AGGCATTCCTGTTGCGCTTC
Band lengths:
342-719
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]