GgaINT0068423 @ galGal3
Intron Retention
Gene
ENSGALG00000015538 | KIAA0232
Description
NA
Coordinates
chr4:82808925-82813665:+
Coord C1 exon
chr4:82808925-82809006
Coord A exon
chr4:82809007-82810367
Coord C2 exon
chr4:82810368-82813665
Length
1361 bp
Sequences
Splice sites
5' ss Seq
AATGTATGC
5' ss Score
3.91
3' ss Seq
CCTTTTTATATTACTTTCAGGTA
3' ss Score
10.26
Exon sequences
Seq C1 exon
AGGAGAAGATTCACAAAAAGTTAGAAGGCTCATTGTCTCCTGAGGCTGATTTATCTCCCACAGCAAAGGATCAAGTAGAAAT
Seq A exon
GTATGCATTTATTATTATTATTAACTTAATCATATTTTATATTAATATATCTTATAACCTCTCTCTTCTCCTTCTATATTCATATTTTAAAACAGTGAAGTTAACTTAGTGGTAAATCTGAAGCTTTGTGGATATTATGCAGTCTTCTTTTTTCCTGCCATCTTCTTTTGTTCATCTTGCATATTTAAGTATAAACAAGTCCTGACTACTTTCTTTTTCCTTCTTCTTTTGACTATAAGCTGATCTCAGACCAATACTGTATTTTAGTCTCCTTGAGACTGAGTCAGCTATAAAAATGAAAAGCCCTTAGAACAGCATTGACTGACAAACTGCGAGAAGAGAATGAGTTTTCCATCTTCTGAACTTCTGTTGCAGAAATGGGAAACTGAAACTCTGTGTAACCCTTAATCTCTTTATAACCAAAGTGGCCTACTGGATACCAAGTACCTCAGTCTGGTCTTTCTGAAGTATCCAGGAGCTTTGTGGTTGACTTTTCTTGGAGATACCGCTTTCTCAATCTTCTTAGCCATTGCTTGCAACAGTATAGTGGAAGTGTTGTGAAATGAACAATACTTCAGGGAGCTGATTCTGTTAACTCACGTTTAACTTAACTGACTTGTGAATGTTTTTGAAAAGGTTTTCATTGGAACATACATGAGAATCTGCATAAATTTATTTATTGTCAAGCATATGCTGCTTCATCTTGTCCTTGTTGGACAGAGCTGTTACGCATGTTATACTACTGTAAGACAATGCCTTCTTTTTTGTTGCAGTAGCTAAGGCTCTCTTTTTTTTTTTTAAGAAGTTGGGACATGTTGGTTTCCTTTGCAAACCCATGCTGATGTTTGATTTTTTTTTGCAACATTTTTTCTAAGTGGAAGATCAAAGTATGTAGAAGCTAACATTCCTTATTTTACAATGTAGAGTTCGCAGTGGACAACTGAAATTCAGAACTTAATTGACTGAAAATGAGGACTTCCTCATGTATACTTTGAAGTTGCACACTTTTAAGATAGCTATTAAATAGCTTCAGTATCTAATAAACTCGGGATCGGGCCTTCGCTATTTTAAGCAATCACAATTTCTATCTACAATGAAGTTTAGTACTTTCTAAAAATGGGAGCTTTACTTTGTAGTATCCTTTAAAACATGCATGAGTATATAAATATAAACTTATCTTAATCTTCCCTTTGTTATTCAGATAAACAGTGCAGTGAATGGCGTGTGCATAAATAGAACAAACTAGGTTTTTTTTATAAGTAGATTGGCAGTGTTTTGATGTGTTTTTAGTAATATTTTCTAATTTTAATGCCTGTCTGAAGTTCTAAGATACAAATGTCACCTTTTTATATTACTTTCAG
Seq C2 exon
GTACTATGAAGCATTTCCTCCTCTATCTGAAAAGCCAGTTTGCCTGCAGGAAATTATGACTGTATGGAATAAATCCAAAGTATGCTCTTACTCTAGCTCCTCATCTTCATCCACTGCTCCACCAACTAGCACAGATACATCTTCTCCAAAGGACTGCAATAGTGAAAGTGAAGTAACTAAAGACAGAAGTAATAAAGTACCTGCCGCTGTACACGAAAGAACGCAGCAGAAGAAAAGTAAAAATGAGAAAGAAAACAAGTTTAGTAACAATGCTGTTGAAGATAAGCCTGTTTTGTATAAAAAACAAGTCCGACATAAGTCTGAGGGAAAGATGCGTCCTCGCTCCTGGTCATCTGGATCCAGTGAGGCTGGCTCAAGTTCTAGTGGTAATCAAGGTGAATACAAGGCGTCGATGAAATGCATTAAAGTAAGACACAAAACAAGAGAGGTTCGAAATAAAAAAGGGCGTAATGGGCAAAGCAGGCTTGCAGTGAAATCTGGTGAAAAGGCCGATAGAAAAGTCCACAGCGGAAGCAGTAGCAGCAGTAGCAGCGGGTCCGTCAAACAGCTGTGCAAAAGAGGTAAAAGGCCATTAAAAGAAATTGGAAGAAAAGAAGCTGGCGGTAATGATGGAAAAGATTTGTACATAGACAGCAGAAATGAAAAGGAATATAAAGAAGAACCCTTGTGGTATACTGAGCCGATTACAGAGTACTTTGTTCCTCTTAGCAGAAAAAGCAAGCTGGAGACTACATACCGCAACAGAGAAGATATATGTGGCATAACATCAGAGGCTGTAGAAGAGTTGTCTGAATCAGTGCATGGTCTTTGTATTAGCAACAATAATGTTCATAAAACATACCTCGCAGCAGGTACTTTCATCGATGGTCACTTTGTAGAAATGCCTGCAGTTCTAAATGAGGATATTGACCTCGCTGGGACCTCAGTTTGTTCTCAACCAGAGGACGACAAATATTTAGATGATGTTCATCTGTCAGAACTAACACACTTCTATGAAGTGGATATTGATCAATCCATGTTGGATCCTGGTGCCTCAGATATGATGCAAGGGGAGAGTCGGATTTTAAATATGATTCGACAGAAGAGTAAAGAAAAAAATGATTTTGAGGCAGAATGTTGCATAGTGTTAGATGGAATGGAGTTGCAAGGGGAAAGTGCAATATGGACAGATTCAACCAGCTCTGTTGGTGCTGAAGGGTGGTTCTTGCAAGACCTTAGTAATTTAGCTCAATTTTGGGAGTGCTGTTCATCTTCTAGTTCTGGCGATGCAGATGGAGAAAGTTTTGGAGGAGATTCTCCTATCAGATTCTCCCCCATCTTAGACAGCACAATGCTTAATTCACATATGCTTGCTGGCAATCAAGAGCTCTTTTCAGATATTAATGAAGGGTCTGGTATAAACTCTTGTTTTTCAGTGTTTGAAGTGCAATGCAGTAACTCTGTTTTACCGTTTTCTTTTGAAACACTCAACTTGGGAAATGAAAATGCAGATTCTAGTAGCACTGCTAATATTCTTGGGAAAACACAGTCTAGGTTGCTAATATGGACCAAAAATAGTGCCTTCGATGAAAATGAACACTGTTCCAATCTTTCAACAAGAACTTGTAGTCCATGGTCACACTCAGAAGAAACACGTTCAGACAATGAGACTTTAAATATTCCGTATGAAGAATCCACGCAATTTAATGCAGAAGATATTAATTATGTAGTTCCTAGAGTGTCTTCAGGTTATGTAGATGAAGAAATTCTAGACTTTTTGCCAGAAGAAACCTGCCAGCAACAAGCTAGAACTTTAGGAGAAATGCCCGCTTTGATTTTCAAGAAAAAATCTAAGCTAGAATCTGTCTGTGGTATTCAGCTAGAACAAAAAGCAGAAAGTAAAGACTTTGAAACTACACAGGGGTGTAGTGCAAGCAGTCCACATGGAGATGGCTACAGCTCAGGGGTTATTAAAGATATTTGGACAAATATGCCAGACAGAAATTCTGCAGCAATGTTAGAAATAGAAGGAATAGAAGATGAATTGTTTTCAACTGATGTAAATAACTATTGCTGCTGTTTGGATACAGAAGCAAAAGTTGAAACCCTCCAGGAGCCCAATAAAGCAGTGCAGAGATCAGAGTATCACCTTTGGGAAGGTCAAAAAGAGAATTTAGAGAAGAGAGCGTTTGTCTCAAATGATTTATCAAAAGTAGATGGTGGTGACTATACTACACCGTCGAAACCTTGGGATGTTAACCAAGATAAAGAAAACTCATTTATACTTGGTGGTGTGTATGGGGAGCTGAAAACATTTAATAGTGATGGAGAATGGGCAGTGGTGCCACCTAGTCACTCAAAAGGGAGCTTATTGCAATGTGCAGCTTCTGATGTAGTGACAATTGCTGGTACAGATGTTTTTATGACTCCAGGTAATAGCTTTGCCCCTGGTCATAGGCAATTATGGAGGCCATTTGTATCATTTGAACAGAGCGATCAATCAAAGAGTGGAGATAATGGATTAAATAAGGGTTTTTCTTTTATCTTCCATGAAGACTTACTGGGAGCTTGTGGTAACTTTCAAGTTGAAGAACCAGGGCTTGAATACTCATTCTCTTCCTTTGACCTGAACAATCCATTTTCTCAAGTTCTTCATGTAGAGTGTTCATTTGAGCCAGAAGGAATTGCATCTTTCAGCCCTAGTTTTAAACCTAAGTCAATTCTGTGCTCTGATTCAGACAGTGAGGTTTTACACCCCAGGATATGTGGTGTTGATCGAACGCAATACAGGGCTATAAGGATTTCTCCAAGGACTCACTTTCGCCCAATTTCTGCATCTGAACTTTCTCCAGGTGGTGGAAGTGAGTCAGAATTTGAATCAGAAAAGGATGAGGGAAGTATTGCTGTCCCTTCTCAAGTAGATGTGTTTGAGGATCCACAAGCAGATCTCAAACCTCTGGAAGAAGATGCAGAAAAAGAAGGGCATTATTATGGAAAATCAGAGCTCGAATCTGGAAAATTTCTTCCCAGATTAAAAAAGTCTGGAATGGAGAAGAGTGCACAAACATCATTGGATTCCCAAGAAGAGTCCACTGGGATGTTACCAGTAGGAAACCAAGATCCGTGTTTAGAATGCAGTATGAAAGAATCCCTAGATGGGAGGGTGATGGAGAGCTCTAAAGTAAACTGCAGAATAGTGGAGCCGCGAGAGGAGACTAGCAGGTTTTGCAGTTGTAAAGCAGGATGCCATTTCCCCAGTTATGAAGATAATCCTGTTTCTTCAGGAGAGCTTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015538:ENSGALT00000025047:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.786 A=NA C2=0.317
Domain overlap (PFAM):
C1:
PF153761=DUF4603=FE(2.1=100),PF144001=Transglut_i_TM=PD(10.9=35.7)
A:
NA
C2:
PF153761=DUF4603=FE(85.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCATTGTCTCCTGAGGCTG
R:
ACAGGCTTATCTTCAACAGCA
Band lengths:
346-1707
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]