BtaINT0081459 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007963 | KIDINS220
Description
kinase D-interacting substrate, 220kDa [Source:HGNC Symbol;Acc:HGNC:29508]
Coordinates
chr11:88505418-88507392:+
Coord C1 exon
chr11:88505418-88505583
Coord A exon
chr11:88505584-88507240
Coord C2 exon
chr11:88507241-88507392
Length
1657 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TTCTTTCCCCTTTCCCCAAGGTT
3' ss Score
9.05
Exon sequences
Seq C1 exon
TTGTCATTTACTTTGGTGGACGGAGGGAAGGAGAGAGTTGGAATTGGGCCTGGGTCCTCAGTACTAGATTGGCAAGACATATCGGCTATTTGGAGCTCCTCCTCAAATTGATGTTTGTGAACCCACCTGAGCTGCCAGAGCAAACCACTAAAGCTCTACCTGTGAG
Seq A exon
GTGAGTTGGTCCCTTTGACAGAAGTAATTTTTAATAAAATGAAGCAAATGAAAGTTGATAATGCATCTTTTCTCATGTTTTTTTAAGAGACCAAAAAAAAAAAACATTGGTCCTTTAAACTTTTTTAACGTGAGAAATAAAACAAAAATGCCCTGGTCAAATACACTTGGAAAACTCTTCATATTACATCTCCCTCTTGTATATTACAGATCAGAGACACCTTTTCATAAAAAATTATATTTAACTTTGATTTGCCAGATTTTATTTGAGTGAAGCTCCACATTCCCCCCTTATGATACTTGTTACCATCCTTTGGACAAATCAGTAAAGAGTACTGGGTCTAGGATGGAGTCCTGGAACTTCTTGACATCAGGGTGTGGCCTTGGCAACTCAGCATGTGCTCTGAGCTGTTCTTTCCTCACCTGTGGATATGTATTTATCCATTCCTCTAAAGTTATCATCATATCAAATGATAATGATATCGTTACCAGGTATGATGATAATGGGAAGGTAAGCAAACAGTTCAGAAAAGATGAGAAACTTGTAAGTCAAAGAGTAAAGGCAATCCGGAGGGCCCCAGAGGAAAGTAAAATGGAAAAAAAGGTTAAAGAACTGAAAGCAAAAGGAATTCAACAGAAATTAGTAAAATAATTAAATATGCAAAGATTAAGAATTTAGAAATTATTGTAAGATAAAATATGTGTAAGTTAAGCTGAAAGTGAATGGACCAAACCTGGTAAGACATCAAAACTATGAGAGGAAGATAAAAATAAAACAGGTAAATAAATGGTATATAGGATTAAATGTTAAGAAAAGGATTTAAAATGAGAAGTTAAAATGAAAAACATAAAAAGAAAACATACAGAGTAGAATAAAAAAAGTTGGGGAAGATATTTTTACATAAATTAAAAGCATTTAAAATTAATGAGATCATTATCTTTTAAAAAGTTAGAACAACTAAAATAGCATTGATTTAATTAAGACCAGGCATACATAGAGGACACTGTGATCCTGGATTGTATTTTGAAAGCAATGCCTGTTTATAGGGTTAAGATGGGAGTTTAGCAGTAGAAAGGAATAAAGGAATAAAGGAACTAATGCAGAAGTAATACCCATTCAGAGGCTCAAAATGCAAATAATTCAGTTATTTCACAGAACAACTAGGAAAAGAATATAACTTCTTTCTCAACCCCTGGTAGATGAGTAAGCTATAAATAGGACATTCTGAAGCTTGAGTTTGACATTAAGTTCTTAATTACTATTTTCTCAAGGTTCTAATCTCTTCAGTTGGTGTTTGCCGAATGTCCTTTGTGCGGCTTTTTCTGACTGATGTGGGGCGCCACTGTTGAATTGTTGTGTCATGAGGTCTGGGGAGATGTCTGGCTCCTTTGTCTAGGTTCTGTCATGACCTTTTCCCTTTTCTGCTTTTAGTCAGAATTGCTTCATATAACTCTACTAATTTAACTTTTGTTACTGTCTTTTCCTAAGAAAAGAATATAAGCTGTTAGAAATGGAAGATACCTAATTACAAATAGAATTTTAAAAACAATGTTTTGACAGAGACAGGAAGGAAACAGGAGCTACATGATAGACATAATGTATGTTGAAACTGTTTCTTTAGGTAGCGGCATAACATTTTCTTTCCCCTTTCCCCAAG
Seq C2 exon
GTTTTTGTTTACAGATTATAATAGACTGTCCAGCGTAGGTGGGGAAACTTCAATGGCTGAAATGATCGCCACCCTCTCGGATGCTTGTGAAAGAGAGTTTGGCTTTTTGGCAACCAGGCTTTTCCGAGTGTTCAAGACTGAAGATACGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007963:ENSBTAT00000061437:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076939=KAP_NTPase=FE(10.7=100)
A:
NA
C2:
PF076939=KAP_NTPase=FE(9.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCATTTACTTTGGTGGACGGA
R:
CCTGCGTATCTTCAGTCTTGAACA
Band lengths:
318-1975
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development