RnoINT0078758 @ rn6
Intron Retention
Gene
ENSRNOG00000023176 | Kidins220
Description
kinase D-interacting substrate 220 [Source:RGD Symbol;Acc:619949]
Coordinates
chr6:44259127-44262428:+
Coord C1 exon
chr6:44259127-44259292
Coord A exon
chr6:44259293-44262276
Coord C2 exon
chr6:44262277-44262428
Length
2984 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CGGGCTTGGTCTTCCCCCAGGTT
3' ss Score
9.13
Exon sequences
Seq C1 exon
TCGTCATTTACTTCGGTGGACGGCGGGAAGGAGAGAGTTGGAACTGGGCCTGGGCTCTCAGTACCAGACTGGCAAGACACATTGGGTACCTGGAGCTCCTCTTCAAACTGATGTTTGTGAACCCACCTGAACTGCCGGAGCAAACTACAAAGGCTTTACCTGTGAG
Seq A exon
GTGAGTTGGTCTTTTGACAGAAGGAATCTTTAATAAAGGTAACAAAAGAATTTAAAGAATTTTACAGGTCATCATATTCCAAAAAAAATTGATACCTTAGTCTTTTAGTCGAACAAAGCAAAAGTATGTTCCAGTACCTTGAGCATACTCAGTACTTCATAGTATATCCCCTTCCTTTGCATGAGGCGATTTTTCCACAAGTTGAAATCTGCTGTTTTTTATGGTATTTTATTTGTACAGAGACCTCTCCCTCTTCCTTGTACCTGTTACATACTTAGGGCTTTCCTGGGAGCAGTACCAGGGTTTAAACTATGGTTTCACCGAGTCACCCTCCATGATGGGGCCACAGCTCGCCTCTATAACTGTCCTTTCTGATGATATCCTGGAAGGAGTATTGACCTTCAGGGTGGAATCCTGGCAGATAGAGGTCTGAACTGAAAGCCTGGCTTCTCCTTGAAGAGCAGTAACCCCTGGAAACCCTGCTCACACTGAGCTGCTCTTTCCTCATCTCTGCAAATAGACATGTGTGTCTAAAATAATTGAGCATCTCAAAAAGGGAATCTTGAGAAAAAGTGTAATAAAGGAATAACGAAAGGTATGAGATTCCAGATGAAAGAAAGGCTTTTTTTTTTTAAGCTAGAAAATTTAGAGCAAAAAGCTTCTGTGGGGTTGGGAAAAAAGAGTTAAAAATTTTTTAAAAGTTATGAAGTTTTAAATTATAATAAGATAAAATATGCATAATTTTAGATGAATGTAAGTCATTATAACCATCAAAACTCTGCTAGGTATATAAGTGAGAAAAATAAAGGTTAAAAAATTATAAATATGAGCTGGAAAGATTGCTCAGTGGTTAGTAGCACTGGCTGCTCTTCCAGAGGTCCTGAGTTCAATTCCTGTCAACCACTTGGTGGCTCACAACCATCTGTAATGAGATCTGATGCCCTCTCCTGGCCTGCAGATGTACATGCAGGTAGAACACTCATATACATAAAATAATAAATAAAGAACTCTTAAAAAAAAAACCAAAACACCCTTTAAAAAATTAGGAAAAAAATTTACAAACACAGCTGGCCTTATTTACTCCTGGGTTCTGCGTCTCTAGATGCAACAAACTGTAAATCAAAATTATTTTAAAAAATTGTACCTGAATTAAAATGCCTTCTCCTTGATACCATGCATGATACCAACAGTGTTGTACAGCATCTGTTTACTGATGTTTACTGTTTATGGAGCATAGCATGTTCATTGCATTAGCCATCATACAGAATCCAGAGATGCTTTAAAGTAGATTGCAGTATGTGCCTTTTGTTTTTTTGTATGAGAGACTTGGGCTGATCCTAGAACCAGCTACCCATGAATACGGAGGAACCACTGTGATCAGCATGTAAATTTAAGCATTAAAAGGTTTAAAACTGAGAAGTTTTAAGGGAAAGCGTTTGAGGTTGGAGATGTGGCTCAATGGTTAGAAGTGCGTGCTGCTTTTGCAGAGGACTCTGGTTTGGTTCTAGCACCTACAATGGGTGACTTACGGCCACTTGTAACTCCAGCATTAGGGGATCTATAATCCTTGTCTGGCTTCCACAGGGATCCATACAGTGTGTATGTAAACACACACACACACACACACACACACACACATTAATCATGAAGTAAATATTTTTTAAAAATAGGTAAAGCGTACAGTATAGGATAACAATAGAGGAAACTTTTGCAGAAAATTAAAACAGTTTAAATGAATAAGATGGGAGTTTTTAAACAGAACAACCAACATAGTATCAGTTAGGACCACAATATATAATAAAGTGTCATTCCAGACTGTAATTTTGAAACATGTTTTATCTCCTGGGTTGAAGTGAGAATTTAGTTTAGACATGGAAGGAAAAGAATGAATTTTGAGACTGAAGATGTCAGGAAATCAATTTTTTTTGAAGAATAACTCTGGAAAGAATAGAATGAATTCTGAGACTGAAGATGTCAGGAAATCAATTTTTTTTTTTGAAGAATAACTCTGGAAAGAATAGAATGAATTCTGAGACTGAAGATGTCAGGAAATCAATTTTTTTTGAAGAATAACTCTGAAAAGAATATTTTACAATTATTTCTAAATACCTGATATATGTTAGAGCTACAAATAAAATAAAACATTAGAAAAGTTAATTTTATTATTTTTAGGTTTATTTTTATTTTGTGTGTGCGTATTTTTGTCTCATGTATGTCTGTGCACCATGTACATGTGTGTATGGGGTTTAGAAGAAGATGTCAGGTCTCTGGACTGAGCTGCCAGGTGGGTGCTAGGAACTAAACCTGGGGCCTCTGGAAGAGCAGCTGGTGTAACCATTGAGCCACCCCTCCAGCAGAAACCCTGCTTCTAAGTGATATTTTTGGGTTTGGAATTCCTGTCTTAGTGAAGACTCTCCTGCTCTGATGGCCTTGGCTGGTATTCGAGCACTTTCTCTTTTGCCCCTATTTTGACATAGGCCAAACTCTGCCATCACTTTCCCGCTTGCCGTTGGCCAGACACACACATTTAACATGTTCGTGTCTCTCCTGAGAGAATGACATGCTCAGAGAAGATAATTAATCACCATCTGCTCCACTCCCTTAGAACTTTAAAAGCAGGTTTTTGAAAAGAAAACCAAAAATTAAAAAAAAAAAAAAAAGAATAGAAAAATGGGGGCTGGAGAAATGGCTCAGTGGTTAGGAGCACAGACTGGGGGTGATTCCCAGCACACACATGGTGGCTCACAACCATCTGTAAATCCACTTCTAAGGGATTGGACTTCCTCATCTGTCTTCTGTGGATACCAGGGATACATGTGGTGCATAGACATAAAATAAAAATTAAAATAATTTTTAAAAGAGGAAACAGGCACTATCTTTTAAAAAAGAAAAAGGAAGTGTGGAATAACTGATGGAGACGGCGTAGTATGTTAGAAATGGCTGCATTCAGTAGCAGAGTAACATCGGGCTTGGTCTTCCCCCAG
Seq C2 exon
GTTTTTGTTTACAGATTACAATAGACTCTCCAGTGTGGGAGGAGAAACTTCCTTGGCTGAAATGATCGCGACCCTCTCAGATGCTTGTGAGAGAGAATTCGGCTTTTTGGCTACCCGTCTTTTTCGAGTCTTCAGGACTGAAGAGTCTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023176:ENSRNOT00000005858:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076939=KAP_NTPase=FE(10.7=100)
A:
NA
C2:
PF076939=KAP_NTPase=FE(9.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]