DreINT0085764 @ danRer10
Intron Retention
Gene
ENSDARG00000031240 | kidins220a
Description
kinase D-interacting substrate 220a [Source:ZFIN;Acc:ZDB-GENE-041014-170]
Coordinates
chr17:34978105-34978915:-
Coord C1 exon
chr17:34978750-34978915
Coord A exon
chr17:34978257-34978749
Coord C2 exon
chr17:34978105-34978256
Length
493 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAAC
5' ss Score
4.81
3' ss Seq
TTTGTTCTCCATCTGTCCAGGTT
3' ss Score
8.6
Exon sequences
Seq C1 exon
TGTTGGTCTACTTTGGTGGGAGAAAAGCAGGTGAGAGTTGGAGTTGGGCCTGGGTCCTAAGCACCAGACTGGCCCGACACATTGGCTACCTGGAGCTGCTACTTAAACTCATGTTCGTCAATCCACCAGAGCTTCCAGAGCAGACCACCAAAGCCCTGCCTGTCCG
Seq A exon
GTAAACACATCCCTGCATTTCACTGCTGTTTAATTAGACACAATTTAAGTAAAAAAAAGGCTAATTCTGTAGGTTTAAAGCCCTCCTGAAGTGCTTTGAATTTGTAGCTTTGTTCATAATGATATAAGGGACTAAGCTGAGAGAAAATTACTGAATAAATAAATGATTGTTCGAAAGAGCAATCATTGACATCCACCGTAGTAAAAAAAAAACAGATGGAAGTCAATGGCTGTATTTTAAAACATTCTTCACATTATCTGGTTTTGAGTTTAACAAAAGAAAAAAACTCAATCAGGTTTGTGTGAAATATCCCTTAAAGACCCCCAAAACTCTTGAATTTTGATTTGAGGGGACTTTAAAGATGTAATCTGCTCTGTCTGTGGGTTTGCAGGCAGGATAAAGAAAGCGTTGGATTACCTGAACATTCTGCTGAAATGCGCACATGTGCGAGGCTCTTTTTCAGTCAGTCTTTTTTTGTTCTCCATCTGTCCAG
Seq C2 exon
GTTTCTGTTCACCGACTATAACCGTCTGTCGAGTGTGGGAGGGGAGACATCCATGGCTGAAATGATAGCCACGCTGTCCGATGCCTGCGAGAGAGAGTTCGGCTTCTTGGCCACCAGACTCTTCAGAGTCTTCAAGAATGATGAAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031240:ENSDART00000145664:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076939=KAP_NTPase=FE(10.7=100),PF126792=ABC2_membrane_2=PD(49.1=94.6)
A:
NA
C2:
PF076939=KAP_NTPase=FE(10.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGGTCTACTTTGGTGGGAG
R:
TCATCATTCTTGAAGACTCTGAAGA
Band lengths:
310-803
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]