HsaINT0087356 @ hg38
Intron Retention
Gene
ENSG00000134313 | KIDINS220
Description
kinase D interacting substrate 220 [Source:HGNC Symbol;Acc:HGNC:29508]
Coordinates
chr2:8786206-8788812:-
Coord C1 exon
chr2:8788647-8788812
Coord A exon
chr2:8786358-8788646
Coord C2 exon
chr2:8786206-8786357
Length
2289 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GATTTGTTCTTTTCTTCAAGGTT
3' ss Score
8.64
Exon sequences
Seq C1 exon
TTGTCATTTACTTTGGTGGACGAAGAGAAGGAGAGAGTTGGAATTGGGCCTGGGTCCTCAGCACTAGATTGGCAAGACATATTGGATATTTGGAACTCCTCCTTAAATTGATGTTTGTGAATCCACCTGAGTTGCCAGAGCAGACTACTAAAGCTTTACCTGTGAG
Seq A exon
GTGAGTTGTACCATTTGACAGAAGAAATCTTCAATGAGATTCAGAAAAAAATATTTTTCACTTCGGAAAGTTTATAGGAGCCGGGTGTGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGCAGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAATTAGCGGGGGCGTCATGGCGCATGCCTGTAGTCCTAGCTACTTGGAAGGATGAAGCAGGAGAATCGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCAGGATCGCGCCATTGCACTCCAGCCTGGGCGACAAGAACGAAACTCTGTCTCAAAAAAAAAAAAAAGTTTATAGAATATAATTTCTCAATGTATGTTCCAAAAAACATTGGAACCTTTTACATACAGAAATAAAAACATGCCCTGGTCAAATACCGTGGGAAACACTTCAGATTATATATCCCTCCTGTACGTTAAAGGATCAGAGGCACCTTTCCATAAAGAAACCTGTTTAACTTTTATTTACCAAATTTTATTTAAGCATAAACCTTTTCTCCCTGTTATGTCACCTGTTACCATCTTTTGGAACACACTTTGAAGAGAGCACTGGATGGAGGAGGGGTCCAGCCACTGGCCTTGGTCCCCAGAGAGCTTCCCGCTGGAGACCTGGCCCTTCCTTATGTGAGCGGTTAACCTGGGGAAACCCAGCTCCCCTCTCTGAGCTGTGCTTTTCTCAGCTCAGGAAATATATTCACATGTCTGTCTAAAATTATTATTCATATTAAGTAGGAAATTTATGAGAAAAAAGAAAAGATGAAAAATGTTTAAGTCCAGGAATAAAGGAAAGGTAGAGGGCTCCAGAGGACAGTGAAATGAAAAAAAAAAAAAGCTAGAAAGTTAAAAGCAAAAGAAATTCAATGGAAGTAAGCAATGTAAGAATTTAAAATGTATTAAGCCAGATGTGGTGGCTCACACCTGTAATCCCAGCACTGTGGGAGGCCAAAGTGGTCAATTGCTTGAGCTCAGGAGTTCAAAACAAGCCTGGGTAAAGGCAAAACCCCATCTCTACAAAAAATAGAAAAATTAGCTGGGTGTGGTGGTGCGTGCCTGTAGTTCTAGCTGCTTGGGAGGCTGAAGTGGGAGGACTGCTTAAGCTTCGGGGGTTGAGGGTACAGTGAGCCAAGATCACGCCACCGCACTGCAGCCTAGGTGACAAAGTGAGACCCTGCTCAAAAAAAAAAAGCATTAAAAGATGAAAATTTTTTAGTTATAAGAAAAAATAAGTGTAATTTAAGATGAAAATAAATAAGCCAAACCAGGTAAAATATTAAAACTGAGTATAAGAGAAAAATAAAGGTAAAAACTTTTAAGTAACTAGCATAGAGAATTAAGTATTAAGAAAAGGATTTAAAAGTGAAAAAGTTAAAAGGAAAACAGAATAAAATAATTGGGGGAATATTTTTACAGAAAATAAGGAAACCAGTCTAAATTAATGAGGTGGTATTTTTTTTTTTCAGTTAGAACAATTAAAGTAGCATCGTCAAGACCACACAGTATATTACAGATTGTATTCTGAGAGCAATGCTTATCTACTGGACTGAGATGAGAGTTTAATTTAGAGATGGAAGGGAGAAAGGAACTAACAGAAATAATAATGATTCAGAGACTCTGAATACAAATAATTCACTTAATTTTGAAGATCAATTGTGAAGAGAATATTTTACAACTATTTCTCAATCCCTGGTAGACGTGGAAGCTATAAATAAAATAAGCCATGCTAAAACTTGAGTTTTTAAATGGTATTACTGGGCTTGAAATTCTTTAATGACTGTAATTAATATTTTTTCAGGGTTAGAGTCTCTTTCGTTGGTGTTAGAAAACTTTCTTGTGCAACTCTTGGTGGCCACATCATGACACGTGTGTCACCTTTTAACCACTATGTCGTGAGATCTGTTGGGGTGTCTTGATACTCCACATCTAAGTTCTGGCGTAACTTTCCCCCGCCTGTCCTTAGTCAGAATTACTTTATATGGCCCTGCACATTTCACTTTTGTTACTGTTTTTTCCTAAGAAAAGTATGTAAGATTTTAGAAGTGGAAGCTACCTAATTACAAATTCTTTTCCCTCCTTGGAATTTAAAAAACAATATTTTGAAAGAGACAAAAAGAAAATAAAGGGTAAGTGATGCAAAGATGACATACATTGAAGTTATTTGTTACTTTAGATAATAAAGTAATGTTTGATTTGTTCTTTTCTTCAAG
Seq C2 exon
GTTTTTGTTTACAGATTACAATAGACTGTCCAGTGTAGGTGGAGAAACTTCTCTGGCTGAAATGATTGCAACCCTCTCGGATGCTTGTGAAAGAGAGTTTGGCTTTTTGGCAACCAGGCTTTTTCGAGTATTCAAGACTGAAGATACTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134313:ENST00000256707:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076939=KAP_NTPase=FE(10.7=100)
A:
NA
C2:
PF076939=KAP_NTPase=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development