GgaINT0078647 @ galGal3
Intron Retention
Gene
ENSGALG00000016409 | KIDINS220
Description
NA
Coordinates
chr3:98785332-98786607:-
Coord C1 exon
chr3:98786442-98786607
Coord A exon
chr3:98785484-98786441
Coord C2 exon
chr3:98785332-98785483
Length
958 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGGT
5' ss Score
6.36
3' ss Seq
TATTTTTTTTCCTCTTTCAGATT
3' ss Score
12.67
Exon sequences
Seq C1 exon
CTGTAATTTATTTCGGTGGTCGAAGAGAAGGTGAGAGCTGGAATTGGGCCTGGGTACTAAGTACAAGACTGGCAAGGCACATTGGATACTTAGAGTTGCTTCTCAAACTCATGTTTGTGAACCCACCAGAGTTACCAGAGCAAACCACTAAAGCTTTACCTGTGAG
Seq A exon
GTTGGTTATTTCACTTACTTGGTTTTGAATGAATAATTCAGGTTCGCTCTGACACTTTCCAGACTGTGCGTATTAATGTGTATGTATATTACTCTATGAAAAACTGTTACGATTACTGTTTGGAGAACAGCAGCTGTAGAGGCTGATGCAGGTAAATTCTTGAGTGTGTAAAGATCAAGAAACTACACTGTCAAAGTACTGCTGCTACTCTGTGCCAAAGTCAGTGAAAGGTACTGCTGCTTGGTGGTGGTGTGTGGTTGTTTTCTTGGTTATTTTGTTGGGTTTTTTTTGTTTGTTTTCAATTAATTTGTGACAGAGAAAGTAAGAAGTTAGCAGTAGGCCATAGCAGAGAATTATGCTTAATGCTTATTTTGCTTATTATTGTTGTTGGGATATCTTTTTAAAACTTTTTTTTCTTTCCTTGCAAGTGGAGCATCAAGCTGCTCAAAGCTTCTAGCTTATTGTAAGCAAAAAAGAATTAGACTGAGTTTTGTGGTTTTGTATACTGCTGTCATTTAGAAGCTGTTATTTTAGCCCAGTGGTGCTTTTATGTGATGTTCCTCTGTATGTTTTTTGATCTGCCGTAAATATTTGATAATATATCAGAGTGTGACTTTAAAAATACTTCTTGACATTATGACCCCAAAGCATAAGGATATTTTTGTTTTTACTGCTGTCTGAGATACCATTGTCGCTATCTTCGTTTTTATCTTTTTTAATAAGTTTTAGAATAGGAAGTGGGCCAAAAAAGAAGTTGATAATGTGATAAATAAGTATGTAATTTCTATGTGAGAGATGAAAAAAGAAGTGTTTTAGATGTTTTCCCACTTGGGAGGAAAAAAACAAATAAAAGAAATGTTTCAGCTACTGATATGCAGGAAGATTTTTGCCTTGGTGGTCTAAAACTATTTCAGGCTTTCCAAAGTATATAACATATATATTTTTTTTCCTCTTTCAG
Seq C2 exon
ATTTTTGTTCACGGACTACAATAGACTGTCCAGTGTAGGTGGAGAAACTTCATTGGCTGAGATGATTGCTACCCTCTCTGATGCATGTGAAAGAGAATTTGGTTTCTTAGCAACAAGGCTATTTCGAGTTTTCAAGACAGAAGATACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016409:ENSGALT00000026464:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076939=KAP_NTPase=FE(10.7=100)
A:
NA
C2:
PF076939=KAP_NTPase=FE(9.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGGTCGAAGAGAAGGTGA
R:
TGTGTATCTTCTGTCTTGAAAACTCG
Band lengths:
303-1261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]