BtaINT0082134 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002280 | KIF5B
Description
kinesin family member 5B [Source:HGNC Symbol;Acc:HGNC:6324]
Coordinates
chr13:33639230-33640159:+
Coord C1 exon
chr13:33639230-33639375
Coord A exon
chr13:33639376-33640010
Coord C2 exon
chr13:33640011-33640159
Length
635 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
3' ss Seq
CCCCCAACTACTTGTCTTAGGGC
3' ss Score
5.44
Exon sequences
Seq C1 exon
ACATATGTTCCGTATCGTGATAGTAAAATGACGCGAATCCTTCAAGATTCCTTAGGTGGGAACTGTAGAACCACTATTGTAATTTGCTGCTCTCCATCATCGTACAATGAATCTGAAACAAAATCTACACTCCTGTTTGGTCAGAG
Seq A exon
GTTTGTTTTTGTTCAGAAAATATAAAGTCTAAATGTAGATAGGCATTTCATTTATTAAATCTAGGTAAGTTTCAGGATAGATATGTTCAAATCAGTGTGTATTATTAGTATGCTAGAAAACATTAAAGTCAAGTGATAACTTGAGTCAGATTTATGTGAGAAGCTTCAGTTCAGTATTAAACATTTGAATCCAATAATAAAGCAAAAACCTGAGGGATATAATAGTATGTTAAGCCTCTTGACATATGTGACCTGTTCAAATAATGGGATAACTGTATATGAGGTGGTTAGCTGAGGCAAATCAATAATGATGACTTGGACTGTCGTTGATAATTGCTTTTCTTAATTCTGTCTTACAAGTGAATTGGAAAAATAATGGGCCCGTGTTTTTTTTTTTCCCTTATCAGGTTGCTGATTTTTTTTTTTAAGCTATTCAGAGGTGTTGTAACTGACCCAAATCTAATGGGTTGTGAATAAACACTAAACTAAGTACAGCTCCTAGAATTTAGTCAGAGATAACTAGAGAAGAATAGTTCAATTACCTAGCCACATATGCTTATATTACAGAGATATAGATATCAATTGAAAATAATTAAGTCATATACTTCCCCTCTCCCCCCAACTACTTGTCTTAG
Seq C2 exon
GGCCAAAACAATTAAGAACACAGTTTGTGTCAATGTAGAGTTAACTGCAGAACAGTGGAAAAAGAAGTATGAAAGAGAGAAAGAAAAAAATAAGACCCTCCGGAACACCATTCAGTGGCTTGAAAATGAACTCAACCGATGGCGTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002280:ENSBTAT00000033899:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.039
Domain overlap (PFAM):
C1:
PF0022518=Kinesin=FE(15.4=100)
A:
NA
C2:
PF0022518=Kinesin=PD(1.3=7.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATATGTTCCGTATCGTGATAGT
R:
ATTACGCCATCGGTTGAGTTCA
Band lengths:
294-929
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development